Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004635.2 Length=2608 Score E Sequences producing significant alignments: (Bits) Value seq519 125 1e-25 seq1694 122 1e-24 seq1129 118 2e-23 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 1479 TCCAGTTCCTGAGACCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCT 1538 |||| ||| ||||| || |||||||| || | ||||||||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1539 CACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGT 1598 ||| ||| ||| | |||||||||||||| || |||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1599 ATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTG----CTTT 1654 | |||||||| ||||| || || || |||| | | ||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1655 AGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATAT 1696 | ||||| ||| || || || ||||||||||| |||||| Sbjct 1742451 ATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATAT 1742492 >seq1694 Length=789422 Score = 122 bits (134), Expect = 1e-24 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1460 AATTTGGCATTCTTGATGGTCCAGTTCCTGAGACCTGTGTTTTCCTCTTTGTTCAGGAAA 1519 |||| ||||| | || ||||| ||| |||| | |||||||||| | | ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1520 TCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTA 1579 ||||||||| ||||| ||||| ||||| || | |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1580 ATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGT 1639 |||||||| | || || || ||||||| ||||| || || || |||| | || | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1640 TCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1694 |||||| | ||||| | ||||| || || || | ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 95.1 bits (104), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1499 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1558 ||||||||||| | || ||||||| | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1559 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATT 1608 ||||||||||| || |||||||||| ||| || || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq1129 Length=1508174 Score = 118 bits (130), Expect = 2e-23 Identities = 169/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 1460 AATTTGGCATTCTTGATGGTCCAGTTCCTGAGACCTGTGTTTTCCTCTTTGTTCAGGAAA 1519 |||| ||||| | || ||| | ||| |||| | ||||||||||| | |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1520 TCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTA 1579 |||||||||| ||||| ||||| ||||| || | | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1580 ATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGT 1639 ||| |||| || || || || |||||||| ||||| | ||| | | |||| | | Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1640 TCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATAT 1696 |||||| | ||||| | ||||| || || | || ||||| ||||| |||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATAT 679219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236500870312