Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004637.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq519 113 8e-22 seq1694 80.6 4e-12 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 174/244 (71%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 1532 AATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCTTCTTTGTCGAGGAAT 1591 |||| |||||| || || |||| ||| ||| || |||| || || || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1592 TCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTA 1651 |||||||| | ||||| | ||| ||| | ||||||||||| || ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1652 ATTTGAACTGGCTTTCCGTAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCA 1711 |||| ||| | |||||| ||||| ||||| ||||| |||||||| | ||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTT-GCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1712 GCTCCCTTCCAGTG----CTTTAACTTTAGATATTGGGGTGTGACATCATCGATGACGTT 1767 | | ||||| || || | ||||| ||| ||| | |||||||| ||||| || Sbjct 1742430 -ATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATT 1742488 Query 1768 GTAT 1771 ||| Sbjct 1742489 ATAT 1742492 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 1532 AATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCTTCTTTGTCGAGGAAT 1591 |||| ||||| ||||| ||||| ||| || | |||| || |||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1592 TCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTA 1651 |||||||| | || || || ||||| || | |||||||||| || ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1652 ATTTGAACTGGCTTTCCGTAACTT--AACAATTTGACTGCCAGTCTTTTTGAGCACCAAT 1709 |||||||| | ||||| |||| || || || ||||| |||||||| | ||||| Sbjct 599752 ATTTGAACAAG-TTTCCCATACTTGCAATAACTT---TGCCAATCTTTTTGCACCCCAAT 599697 Query 1710 CAGCTCCCTTCCAGTGCTTTAACTTTAGATATTGGGGTGTGACATCATCGATG 1762 | | | ||| | ||||| | ||||| || ||| | ||||||| ||| Sbjct 599696 -AAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATG 599645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8428493897592