Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004638.1 Length=2582 Score E Sequences producing significant alignments: (Bits) Value seq1129 145 1e-31 seq519 141 2e-30 seq1694 138 2e-29 >seq1129 Length=1508174 Score = 145 bits (160), Expect = 1e-31 Identities = 265/384 (69%), Gaps = 8/384 (2%) Strand=Plus/Minus Query 1450 GCATTCTTGAGAGTCCAGTTTTTGAGAGACGCATTTTCTATTTTCTCGAGGAAAGCTTTA 1509 ||||| | ||| ||| | || ||||| | ||||||| ||| || |||||| ||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1510 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1569 |||| | ||| || || ||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1570 ACGGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTC 1629 ||||| || || ||||||||||| |||||||||||||| | |||| | | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1630 CAGTGCTTTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCA 1689 | ||||| | ||||| ||| || | || ||||| ||||| ||||| | || Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCA 679210 Query 1690 T--TCGAATAGACCCTAGAATTGAAATC---GAGATGACCGCTCAAGTAATTATGTGGGC 1744 | | ||||| | | |||||||| | |||| ||| | | ||||||||| || Sbjct 679209 TTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGT 679152 Query 1745 CTAAGACCCGTGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGATACTAA 1804 | | || ||| | | || ||||| ||||| || ||||| || ||||| Sbjct 679151 CGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTT 679092 Query 1805 TAGGTCTCTCCGGCCGCGCAGCGG 1828 ||||||| || |||| |||| ||| Sbjct 679091 TAGGTCTATCTGGCCACGCATCGG 679068 Score = 91.5 bits (100), Expect = 2e-15 Identities = 285/434 (66%), Gaps = 33/434 (8%) Strand=Plus/Minus Query 2030 CAGCATTCAACGCCTTGGCATATGTATCGTTAACTGACTGTTGACCTCCTCTAGCAGATC 2089 ||| ||| | ||| ||||||||| ||| ||||| || | || ||| |||||| ||| Sbjct 678805 CAGAATTAATCGCTTTGGCATATACATCTGCAACTGTTTGCTTACATCCCCTAGCATATC 678746 Query 2090 TGCCGTCGATCTGGAATTCTCCCCATTCAACTGAATCTCCG-----TCCTTGTCGATATA 2144 | || || || || || || ||||| || || | |||||| ||||| || || || Sbjct 678745 TTCCTTCAATTTGAAAATCACCCCAATCTACATAGTCTCCGATCCCTCCTTTTCAATGTA 678686 Query 2145 GGACTTGACGTCGGAGCTCGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCT 2204 || || | || ||||||| || | || |||||| | |||| || Sbjct 678685 TGATTTAATATC--------ATTTAGCAGATTGAACATTTGGATGGT--TCTGTT-ACTG 678637 Query 2205 GGTTGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCA-CTGATATTTACCTTCGAACT 2263 |||| | ||||| || || | ||| ||||| | || |||| ||| ||||| Sbjct 678636 TGTTGT-------ATGTCGAAAAACCTTTGATTAGTGCATCAGA-ATTTCCCTATGAACT 678585 Query 2264 GGACAAGCACGTGGAGATGAGGTTCCCCA-----TTCTCGTGCAATTCTCTGCAAATCTT 2318 ||| ||| ||||| | ||| |||||||| || | | | | || | |||| || | Sbjct 678584 GGAGAAGTACGTGCAAATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCT 678525 Query 2319 GATGAATTTCTTGTTAGTCGGAGTGTTTAGGTTTTGTAGTTGGGAAAGTGCCTCCTCTTT 2378 ||||| || || || || ||| |||||||| || || ||| || || ||||| Sbjct 678524 TATGAAGTTTAGATTTGTAGGGTAGTTGAGGTTTTG-AGATGATGAAGAGCATCATCTTT 678466 Query 2379 GCTAAGAGAGCAT-TTGGGATATGTGAGGAAATAGTTTTTAGAGTTAATTCTAAAGCGTT 2437 ||||| ||| ||| || | |||||||||||||||| || |||||||| | Sbjct 678465 TGAGAGAGAACATCTTGAGAAAC-TGAGGAAATAGTTTTTGCTATTTATTCTAAATATGT 678407 Query 2438 TGGGTGGCAttttt 2451 |||| | || |||| Sbjct 678406 TGGGAGCCACTTTT 678393 >seq519 Length=3254320 Score = 141 bits (156), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1450 GCATTCTTGAGAGTCCAGTTTTTGAGAGACGCATTTTCTATTTTCTCGAGGAAAGCTTTA 1509 ||||| | || |||| || ||||||| ||||||| || || |||||| ||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1510 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1569 ||| | |||||| | ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1570 ACGGGCTTTCCG-TACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTT 1628 ||| | |||||| |||||||||| ||||||||||||||| |||| | | |||||| Sbjct 1742378 ACGAG-TTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1629 CCAGTG----CTTTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTATA 1679 ||| || || | ||||| |||| || || || ||||||||||| ||||| Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 123 bits (136), Expect = 4e-25 Identities = 264/383 (69%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 2073 ACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCAACTGAATCTCCGTC 2132 || ||| ||||||||||| || || || || || || | || || || | ||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2133 CTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGTATGTTCGGATGGAA 2192 ||| ||||| || || || || | ||| | ||||||| || | || ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2193 ATGTGTTGACCTGGTTGGGGAGA-CCAGATCGAAGAATCTGTTATTCGTGC-ACTGATAT 2250 || | | || ||| ||| || | || || |||| | ||| |||| || || || Sbjct 1743258 TTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGA-AT 1743315 Query 2251 TTACCTTCGAACTGGACAAGCACGTGGAGATGAGGTTCCCCATTCTCGTGCAATTCTCTG 2310 |||||| ||| |||| ||| || || | ||| |||||||| || ||| | |||| || Sbjct 1743316 TTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTG 1743375 Query 2311 CA-AATCTTGATGAATTTCTTGTTAGTCGGAGTGTTTAGGTTTTGTAGTTGGGAAAGTGC 2369 || | |||| |||||||| || || || ||| ||| ||| || || ||| || Sbjct 1743376 CACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGC 1743434 Query 2370 CTCCTCTTTGCTAAGAGAGCAT-TTGGGATATGTGAGGAAATAGTTTTTAGAGTTAATTC 2428 || ||||| | || || ||| |||||| | |||||||||| ||||| || |||| Sbjct 1743435 ATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTC 1743493 Query 2429 TAAAGCGTTTGGGTGGCAttttt 2451 |||| | ||||| | ||||||| Sbjct 1743494 TAAACC--TTGGGAGCCATTTTT 1743514 >seq1694 Length=789422 Score = 138 bits (152), Expect = 2e-29 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 1450 GCATTCTTGAGAGTCCAGTTTTTGAGAGACGCATTTTCTATTTTCTCGAGGAAAGCTTTA 1509 ||||| | ||| ||||| || ||||| | | ||||||| || || ||||| ||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1510 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1569 ||| | ||| || || ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1570 ACGGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTC 1629 || | || || |||||||||| ||||||||||||||| |||| | || ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1630 CAGTGCTTTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTAT 1678 | ||||| | ||||| ||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 100 bits (110), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 2221 TCGAAGAATCTGTTATTCGTGCACTGATATTTACCTTCGAACTGGACAAGCACGTGGAGA 2280 ||||| || | | ||| ||||| | |||| ||| |||||||| ||| ||||| | | Sbjct 588248 TCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAA 588189 Query 2281 TGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAATCTTGATGAATTTCTTGTTAGTCGGA 2340 || |||||||| | ||||| ||||||||| | | |||||||| || || || Sbjct 588188 TGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAGA 588129 Query 2341 GTGTTTAGGTTTTGTAGTTGGGAAAGTGCCTCCTCTTTGCTAAGAGAGCAT-TTGGGATA 2399 ||| ||||||| || || ||| | || ||||| ||||| ||| |||||| | Sbjct 588128 TAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAAA 588069 Query 2400 TGTGAGGAAATAGTTTTTAGAGTTAATTCTAAAGCGTTTGGGTGGCAttttt 2451 |||||||||||||||| || |||||||| | || || | ||||||| Sbjct 588068 -GTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTTCGGAGCCATTTTT 588018 Score = 91.5 bits (100), Expect = 2e-15 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 1450 GCATTCTTGAGAGTCCAGTTTTTGAGAGACGCATTTTCTATTTTCTCGAGGAAAGCTTTA 1509 |||| | ||| | ||| || || || | | ||||||| ||| || | |||| || | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1510 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1569 ||| | ||| || | ||||||| | |||||||||||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1570 ACGGGCTTTCCGTACTTGCAATTTGATTGCCAA 1602 ||||| || || ||||||||||| ||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATTACTTTGCCAA 596118 Score = 82.4 bits (90), Expect = 1e-12 Identities = 263/397 (66%), Gaps = 12/397 (3%) Strand=Plus/Minus Query 2061 AACTGACTGTTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCAAC 2120 ||||| || | || || ||||||||||| || ||||| || || || ||||| || || Sbjct 599276 AACTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTAC 599217 Query 2121 TGAATCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGTAT 2180 | ||||| ||||| || || || || || || | ||| ||||| | ||| | Sbjct 599216 GTAGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAAC 599157 Query 2181 GTTCGGATGGAAATGTGTTGACCTGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCGT 2240 | |||||||| || | | ||| | ||| | ||||| || || | || || Sbjct 599156 ACTTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGT 599098 Query 2241 GC-ACTGATATTTACCTTCGAACTGGACAAGCACGTGGAGATGAGGTTCCCCATTCTCGT 2299 | || || |||| ||| ||| | || ||| ||||| | ||| |||||||| || || Sbjct 599097 TCAACAGA-ATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGT 599039 Query 2300 GCAATTCTCTGCA-AATCTTGATGAATTT---CTTGTTAGTCGGAGTGTTTAGGTTTTGT 2355 ||||||| ||| | |||| |||||||| || ||| || | ||| |||||| | Sbjct 599038 CTAATTCTCAGCACACTCTT-ATGAATTTGAGATTTATAG-CGTA--GTTGGGGTTTTTT 598983 Query 2356 -AGTTGGGAAAGTGCCTCCTCTTTGCTAAGAGAGCATTTGGGATATGTGAGGAAATAGTT 2414 | || ||| | || ||||| ||||||||| | || | ||| |||||||||| Sbjct 598982 GAAATGATGAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTT 598923 Query 2415 TTTAGAGTTAATTCTAAAGCGTTTGGGTGGCAttttt 2451 | || |||||||| ||||| ||||||| Sbjct 598922 TAAGCTATTTATTCTAAACTTGTTGGGAACCATTTTT 598886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8153303891824