Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004639.1 Length=2661 Score E Sequences producing significant alignments: (Bits) Value seq1129 134 2e-28 seq519 134 2e-28 seq1694 113 8e-22 >seq1129 Length=1508174 Score = 134 bits (148), Expect = 2e-28 Identities = 172/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1534 AATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCCTCTTTGTCGAGGAAC 1593 |||| ||||| ||||| ||| | ||| || | |||| |||||||| || ||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1594 TCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTTA 1653 |||||||| | | || || || ||||| || | | ||||||||||| ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1654 ATTTGAACTGGCTTTCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGC 1713 ||| |||| || || || ||||| ||||| ||||| |||||||| | ||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1714 TCCTTCCAGTGCTTTAACTTTAGATATTGCGGAGTGACATCATCAATGACGTTATA 1769 || ||| | ||||| | ||||| || ||||| |||||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 134 bits (148), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1534 AATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCCTCTTTGTCGAGGAAC 1593 |||| |||||| || || |||| ||| ||| || |||| ||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1594 TCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTTA 1653 |||||||| | ||||| | ||| ||| | |||||||||||||| ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1654 ATTTGAACTGGCTTTCCG-TACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAG 1712 |||| ||| | |||||| |||| ||||| ||||| |||||||| | ||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1713 CTCCTTCCAGTG----CTTTAACTTTAGATATTGCGGAGTGACATCATCAATGACGTTAT 1768 || ||||| || || | ||||| ||| |||| |||||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1769 A 1769 | Sbjct 1742491 A 1742491 >seq1694 Length=789422 Score = 113 bits (124), Expect = 8e-22 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1534 AATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCCTCTTTGTCGAGGAAC 1593 |||| ||||| ||||| ||||| ||| || | |||| ||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1594 TCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTTA 1653 |||||||| | || || || ||||| || | |||||||||| ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1654 ATTTGAACTGGCTTTCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGC 1713 |||||||| | || || ||||| |||| ||||| |||||||| | ||||| | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1714 TCCTTCCAGTGCTTTAACTTTAGATATTGCGGAGTGACATCATCAATGACGTTAT 1768 || ||| | ||||| | ||||| || |||| ||||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 87.8 bits (96), Expect = 3e-14 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1534 AATTTA-GCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCCTCTTTGTCGAGGAA 1592 |||||| |||| ||||||| ||| ||| || | |||| |||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1593 CTCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTT 1652 ||| | || | || || | ||||||| | |||||||||||||| |||||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1653 AATTTGAACTGGCTTTCCGTACTTACAATT 1682 ||||| ||| || || || ||||| ||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8406094711076