Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004640.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq1694 111 3e-21 seq519 109 1e-20 seq1129 91.5 3e-15 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 186/268 (69%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 2134 ATTATGATATTGAAAAATAAAATCTCTAGGGAGTTTCTCCCTAATTATTTGTAATGCTGC 2193 ||||||||||| | | || ||| | | ||| |||||| | ||||||||||||| ||| Sbjct 599377 ATTATGATATT-ATAGATGAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATGTTGC 599319 Query 2194 TTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCTGACCTCC 2253 || || | | || | | || | | || | | |||| |||| || || Sbjct 599318 ATCTCTGGACCTAGAATTAATCACTTCAGTGTATACACCTGCAACTGTTTGCTTACATCT 599259 Query 2254 TCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCTTTCTC 2313 |||||||||||||| |||| ||||||| |||||| || | ||| || || || || || Sbjct 599258 CCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTC 599199 Query 2314 GATGTAGGACTTGACATCTGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATTGGTT 2373 ||||| || || |||| || | |||||| | ||| | | ||||||||||||| | Sbjct 599198 AATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAAT 599139 Query 2374 GGAGCTGTTGGGGTGTTGCAGGTCGAAA 2401 | ||||| |||||| | | ||||||| Sbjct 599138 AGTTCTGTTAGGGTGTGGTATGTCGAAA 599111 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 207/297 (70%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 2111 ATTCTATCTAAATTACTACGTAAATTATGATATTGAAAAATAAAATCTCTA-GGGAGTTT 2169 |||| | | |||||| | |||||||||||||| | ||| ||| |||| ||| ||| Sbjct 1748816 ATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA-CTCTTTGGGTCTTT 1748874 Query 2170 CTCCCTAATTATTTGTAATGCTGCTTCAGCAGAGCCTGCGT--TTAAG-GCCTCTGCTGC 2226 ||| | ||||||||||||||||| || | ||| | |||| || || || Sbjct 1748875 CTCTTTTATTATTTGTAATGCTGCATCTCTTGG---TGCATAATTAATCGCTTCAGCGTA 1748931 Query 2227 TGCATCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACC 2286 | |||| | || | | || || ||| ||| |||||||||| || | ||||||| | | Sbjct 1748932 TACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATC 1748991 Query 2287 CCAGTCGATGTAATCACCGTCTTTCTCGATGTAGGACTTGAC--ATCTGATGATGATTTA 2344 ||| || | || || || || || || ||||| || || || ||| | | ||||||| Sbjct 1748992 CCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTA 1749051 Query 2345 GCTCCCTGGAAATTTGGATGGAATTGGTTGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2401 || || | ||||||||||||||| ||| || || |||| ||| | ||||||| Sbjct 1749052 GCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGT-TTGTATGTCGAAA 1749107 Score = 102 bits (112), Expect = 1e-18 Identities = 189/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 2132 AAATTATGATATTGAAAAATAAAATCTCTA-GGGAGTTTCTCCCTAATTATTTGTAATGC 2190 |||||||||||||| | | | ||| |||| ||| ||||| | ||||||||||||| Sbjct 1743022 AAATTATGATATTGTAGAGTGAAA-CTCTTTGGGTCATTCTCTTTTATTATTTGTAATGT 1743080 Query 2191 TGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGC-TGCATCATTAGCTGTCTGCTGAC 2249 || || || ||| |||| || | || | |||| | || | |||| || Sbjct 1743081 TGAATCTCTTGA-CCTAGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTAC 1743139 Query 2250 CTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCTT 2309 ||| |||||||||||||| || | ||||||| | | || || | ||| || || || | Sbjct 1743140 ATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCT 1743199 Query 2310 TCTCGATGTAGGACTTGACATCTGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATT 2369 | |||||||| || || |||| || | |||||||| || | |||| ||||||||| Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2370 GGTTGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2401 | ||| ||||| ||||| | | ||| ||| Sbjct 1743260 GAATGGTTCTGTTAGGGTGATATATGTCAAAA 1743291 >seq1129 Length=1508174 Score = 91.5 bits (100), Expect = 3e-15 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 2134 ATTATGATATTGAAAAATAAAATCTCTA-GGGAGTTTCTCCCTAATTATTTGTAATGCTG 2192 ||||||| |||| | ||| ||| |||| ||| |||| | ||||||||||||| || Sbjct 695371 ATTATGAGATTGTAGAATGAAA-CTCTTCGGGTCATTCTATTTTATTATTTGTAATGTTG 695313 Query 2193 CTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCTGACCTC 2252 | || ||| | | || | || || || | ||| | ||| |||| || || Sbjct 695312 CATCTCTAGACCAAGAATTAATCGCTTCAGCGTATACATATGCAATTGTTTGCTTACATC 695253 Query 2253 CTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCTTTCT 2312 |||||||||||| || | || |||| ||| || || | ||| || || || || | Sbjct 695252 TCCTAGCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCTTTT 695193 Query 2313 CGATGTAGGACTTGACATCTGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATTGGT 2372 | ||||| || || ||||| || | | ||||||| || | ||||| |||||||| | Sbjct 695192 CAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATTAGA 695133 Query 2373 TGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2401 | | |||| ||||||| | ||||||| Sbjct 695132 TAGTTTTGTTAGGGTGTTTTATGTCGAAA 695104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8761272453060