Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004641.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq519 120 5e-24 seq3069 78.8 2e-11 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 120 bits (132), Expect = 5e-24 Identities = 264/391 (68%), Gaps = 11/391 (3%) Strand=Plus/Plus Query 2230 ACCTCCTCTAGCCGATCTTCCATCGATTTGGAAAACTCCAAAATCAATGATGTCCCCGTC 2289 || ||| ||||| ||||||||||| ||||| ||| | | |||| | | ||| || || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2290 TTTTTCCATGTAGGTCTTGACATCTGAAGAGCTTTTAGCTCCCTGAATGTTTGGATGGAA 2349 ||||| ||||| | || |||| || | ||||| |||| ||| ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2350 ATGTGCTGACCTGGTTGGG-GATACGAGGTCGAAGAATCGTTGATTTGTGCATTGGTATT 2408 || | ||| | ||| |||| | ||| || |||| |||||| ||||| | ||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2409 TCCCCTCGAATTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGC 2468 | || ||| ||||| || | || | ||| || ||| | ||| || ||| ||| Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGC 1743376 Query 2469 AAATTCTGATGAATAATTTATTTGTTGG--AGTTTCTAGGGCTTTAATTTGGGTAAGAGC 2526 | | ||| |||||| | |||||| || |||| ||| ||| | || |||||| Sbjct 1743377 ACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG--AGGCTTTTGAGATGATGAAGAGC 1743434 Query 2527 TTCCTCTTTAGTGAGCGAGCAGTGTGGGTATGTAACGAAATAATTTTTGCTGTTTATTCT 2586 || ||||| ||||| || || |||| | || | ||||| ||||||||| |||||||| Sbjct 1743435 ATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCT 1743494 Query 2587 AAAACGTTTCGGTGGAGCCATATTTACAAAT 2617 ||| | | |||||||| ||| |||| Sbjct 1743495 AAACCTT-----GGGAGCCATTTTTTAAAAT 1743520 Score = 89.7 bits (98), Expect = 9e-15 Identities = 262/393 (67%), Gaps = 12/393 (3%) Strand=Plus/Plus Query 2230 ACCTCCTCTAGCCGATCTTCCATCGATTTGGAAAACTCCAAAATCAATGATGTCCCCGTC 2289 || ||| ||| | ||||||||||| ||||| ||| | | |||| | ||| || || Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTC 1749012 Query 2290 TTTTTCCATGTAGGTCTTGACATCTGAAGAGCT--TTTAGCTCCCTGAATGTTTGGATGG 2347 ||||| ||||| | || || | || | | |||||| |||| ||||||||| Sbjct 1749013 CTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGG 1749072 Query 2348 AAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCGTTGATTTGTGCATTGGTAT 2407 || || | || || ||| | | |||||| || | |||||| ||||| | || Sbjct 1749073 AATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAAT 1749131 Query 2408 TTCCCCTCGAATTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTG 2467 ||||| ||| | || || | || | ||| || |||| | ||| || |||||| Sbjct 1749132 TTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTG 1749189 Query 2468 CAAATTCTGATGAATAATTTATTTGTTGG--AGTTTCTAGGGCTTTAATTTGGGTAAGAG 2525 || | | | |||||| |||||| || |||| ||| ||| | || |||| Sbjct 1749190 CACACTTTTATGAATTTAAGATTTGTAGGGTAGTTG--AGGTTTTTGAGATGACGAAGAA 1749247 Query 2526 CTTCCTCTTTAGTGAGCGAGCAGTGTGGGTATGTAACGAAATAATTTTTGCTGTTTATTC 2585 | || ||||| ||||| | || |||| | || | |||||||||||||| ||||||| Sbjct 1749248 CATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTC 1749307 Query 2586 TAAA-ACGTTTCGGTGGAGCCATATTTACAAAT 2617 |||| | ||| | |||||||| ||| ||||| Sbjct 1749308 TAAACATGTTATTG-GGAGCCAT-TTTTCAAAT 1749338 >seq3069 Length=10854949 Score = 78.8 bits (86), Expect = 2e-11 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1299 TTCCTGAGGTTGTGGTTGAATTGTATTTGTATAGTTATTATGTCTTGTTCCATGTTGAAT 1358 |||||||||||| |||||||||||| || || ||| ||||| || || |||| ||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1359 GGTCGTTGGGCGTGGCTCGTGATTTTGAAATATAGGGGATTTGGCACTGTCCAGATATAC 1418 |||| ||| | || | |||||||||||||||||||| ||| || ||||| Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1419 GCGCCATT 1426 || |||| Sbjct 3754528 ACGTCATT 3754535 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 161/236 (68%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 2377 GTCGAAGAATCGTTGATTTGTGCATTGGTATTTCCCCTCGAATTGGATGAGGATGTGGAG 2436 |||||| || |||||| ||||||| | ||||||| ||| |||| || | ||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2437 ATGAGGGCTCCCATCTTC-GTGAAGCTCTCTGCAAATTCTGATGAATAATTTATTTGTTG 2495 ||| || |||| | | ||| || |||||||| | || |||||| |||||| Sbjct 588189 ATGTGGT-TCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAA 588131 Query 2496 GAGTTTCTAGGGCTTTAATTTGGGTAAGAGCTTCCTCTTTAGTGAGCGAGCAGTGTGGGT 2555 || | ||| ||| | || |||| | || ||||| | ||| || || |||| Sbjct 588130 GATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA 588071 Query 2556 ATGTAACGAAATAATTTTTGCTGTTTATTCTAAAACGTTTCGGTGGAGCCATATTT 2611 | || | |||||| |||| ||| ||||||||||| | ||| |||||||| ||| Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTTC---GGAGCCATTTTT 588018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8722883206088