Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004642.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq1129 167 4e-38 seq519 143 4e-31 seq1694 132 8e-28 seq3069 78.8 2e-11 >seq1129 Length=1508174 Score = 167 bits (184), Expect = 4e-38 Identities = 275/393 (70%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 1460 AATTTTGCATTGTGGAGTGTCCAATCTTTTAGTGCTTTGTTTTCCTCTTTTTCGAGGAAA 1519 |||| |||||| ||||| ||| ||| || || || ||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1520 CTTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTA 1579 |||||||| || || ||||| ||||| || | | |||||| || | |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1580 ATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGC 1639 ||| |||| || ||||| || |||||||| |||||| | ||||| | ||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1640 TCTTTCCAATGCTTCATCTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCC 1699 |||||| |||||||||||||||| || ||||| | ||||| ||||| || ||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1700 GCTTCATTTGAGTAAACCCTAGAATTGAAATCTA---GGTGTCCACTCAAATAATTGTGT 1756 || ||||| | | || |||||||||| | || || | | ||||| || Sbjct 679215 GCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGA 679156 Query 1757 GGGCCTAAGGCACGCGCCCACATTGTCTTTCCCGTCCTCGA--TTCACCCTCGATGATTA 1814 || | | | || ||| | | || || || | |||| | || || ||||||| Sbjct 679155 CGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCC--TATTCGACTTGGGCCTTCAATGATTA 679098 Query 1815 TACTTATAGGTCTCTCCGGCCGCGCAGCGGCAT 1847 ||||| ||||||| || |||| |||| ||| || Sbjct 679097 TACTTTTAGGTCTATCTGGCCACGCATCGGTAT 679065 >seq519 Length=3254320 Score = 143 bits (158), Expect = 4e-31 Identities = 183/252 (73%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1460 AATTTTGCATTGTGGAGTGTCCAATCTTTTAGTGCTTTGTTTTCCTCTTTTTCGAGGAAA 1519 |||| ||||| || || |||||| || || ||| |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1520 CTTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTA 1579 ||||||| || ||||||| ||| ||| | |||||||| || || || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1580 ATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGC 1639 |||| ||| | |||| | |||||||| |||||| || ||||| ||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1640 TCTTTCCAATG----CTTCATCTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGTA 1695 ||||||||||| || ||||||||| ||| |||| | ||||||||||| || || Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Query 1696 TTCCGCTTCATT 1707 | || ||||| Sbjct 1742492 TGTTGCATCATT 1742503 >seq1694 Length=789422 Score = 132 bits (146), Expect = 8e-28 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1460 AATTTTGCATTGTGGAGTGTCCAATCTTTTAGTGCTTTGTTTTCCTCTTTTTCGAGGAAA 1519 |||| |||||| ||||| ||||||| || || || |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1520 CTTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTA 1579 ||||||| || || ||||| ||||| || | |||||||| | || | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1580 ATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGC 1639 |||||||| | ||||| || ||||||| |||||| || ||||| ||||||| | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1640 TCTTTCCAATGCTTCATCTTTAAATA 1665 |||||| | |||||||||||||| || Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTA 599667 Score = 95.1 bits (104), Expect = 2e-16 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1460 AATTT-TGCATTGTGGAGTGTCCAATCTTTTAGTGCTTTGTTTTCCTCTTTTTCGAGGAA 1518 ||||| ||||| ||||||| ||||| || || || ||||||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1519 ACTTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTT 1578 | | | ||| || || |||| ||||||| | |||||||| || || || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1579 AATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCA 1617 ||||| ||| || ||||| || |||||||| |||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq3069 Length=10854949 Score = 78.8 bits (86), Expect = 2e-11 Identities = 153/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 1164 GCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATGTGGT--ATATCCTGGT-GTTGCTG 1220 || |||||||||||| |||||| |||| ||||| | || || |||| |||| | Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTT- 3754463 Query 1221 TAAATTGGGTCCTCTACATTGAT--TATCGTGAAATAAAGGGGATTTGGTACCTCCCAGA 1278 |||| | |||||| | || || | ||||||| |||||||||||||| || || | Sbjct 3754464 -AAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAA 3754522 Query 1279 TAAAAACGGAATTCTCTGC-CTGATCCGCAGTGATGCTCTCCCCTGTGCGTGAATCCATG 1337 || | ||| ||| | ||| || | ||| ||||| | | ||| ||||| ||| ||| Sbjct 3754523 TATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATT 3754581 Query 1338 GTTGGCGCAGTCGATGTGCTGGTAGAACGAGCAGCCACA 1376 ||| ||| | |||| |||||| | | ||| ||||| Sbjct 3754582 GTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8188502613492