Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004645.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq1129 158 2e-35 seq519 154 2e-34 seq1694 152 8e-34 >seq1129 Length=1508174 Score = 158 bits (174), Expect = 2e-35 Identities = 269/388 (69%), Gaps = 4/388 (1%) Strand=Plus/Minus Query 1480 AATTTAGCATTTTTTAATGTCCAGGCCTTTAGTGCGGTATTTTCCGCTTTGTCCAGGAAA 1539 |||| ||||||| | ||| | ||| || || ||||||| |||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1540 TCTTTATAGCTGGCCCCCTCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTA 1599 |||||||||| || || || |||||||| |||| | |||||| |||| ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1600 ATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAAT 1659 ||| |||| || || ||||| || || || |||||| ||| | | | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAA 679276 Query 1660 TCTTTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCG 1719 |||||| ||||||| | ||||| ||| |||| || ||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1720 GCATCGTTCGAGAAAACCCTAGAATTGAAATCAA---GGTGCCCACTGATATAGTTATGA 1776 ||||| || ||| || |||||||| | | || || | || || |||||| Sbjct 679215 GCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGA 679156 Query 1777 CGCCCTAGGGCACGAGCCCACATTGTCTTGCCGGTTCTAGAATCACCCTCTACTATTATA 1836 || | || | || ||| | | || ||||| ||| | || || | |||||| Sbjct 679155 CGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATA 679096 Query 1837 CTTATATTTCTATATGGCCGCGCAGCGG 1864 ||| || ||||| ||||| |||| ||| Sbjct 679095 CTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 154 bits (170), Expect = 2e-34 Identities = 191/261 (73%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 1480 AATTTAGCATTTTTTAATGTCCAGGCCTTTAGTGCGGTATTTTCCGCTTTGTCCAGGAAA 1539 |||| |||||||| || |||| ||| || || ||||||| | || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1540 TCTTTATAGCTGGCCCCCTCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTA 1599 ||||||||| || ||||| | | ||| ||||| |||||||| ||||| ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1600 ATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAAT 1659 |||| ||| | || | | | || || || |||||| ||| | || ||||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1660 TCTTTCCAATG----CTTTAGCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATA 1715 ||||||||||| || | ||||| |||| ||||| || ||||| ||||| ||||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Query 1716 CTCGGCATCGTTCGAGAAAAC 1736 ||||| || |||| || Sbjct 1742492 TGTTGCATCATTGCAGAATAC 1742512 >seq1694 Length=789422 Score = 152 bits (168), Expect = 8e-34 Identities = 214/298 (72%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 1480 AATTTAGCATTTTTTAATGTCCAGGCCTTTAGTGCGGTATTTTCCGCTTTGTCCAGGAAA 1539 |||| ||||||| | ||||| ||| || || ||||||| ||| ||| ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1540 TCTTTATAGCTGGCCCCCTCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTA 1599 ||||||||| || || || |||||||| |||| |||||||| | ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1600 ATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAAT 1659 |||||||| | || ||||| || || | |||||| ||| | || ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1660 TCTTTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCG 1719 |||||| | ||||| | ||||| ||| ||||| | ||||| ||| | |||| || | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT-CTGG 599634 Query 1720 -GCATCGTTCGAGAAAACCCTAGAATTGAAATCAAGGTGCCCACTGATATAGTTATGA 1776 ||||| ||| |||| || ||||||||| ||| || || || || |||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATGA 599576 Score = 98.7 bits (108), Expect = 2e-17 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1480 AATTTA-GCATTTTTTAATGTCCAGGCCTTTAGTGCGGTATTTTCCGCTTTGTCCAGGAA 1538 |||||| |||| || | || ||| ||| || || ||||||| |||| |||| ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1539 ATCTTTATAGCTGGCCCCCTCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTT 1598 |||| | ||| || || || | | ||||||||| |||||||| ||||| |||||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1599 AATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCA 1637 ||||| ||| || || ||||| || || || |||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8249300405464