Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004647.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq519 105 1e-19 seq1694 96.9 6e-17 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 239/349 (68%), Gaps = 8/349 (2%) Strand=Plus/Plus Query 2230 ACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAATTCCAAAATCAAGGACGTCTCCGTC 2289 || ||| ||||| ||||||||||| | ||| ||| | |||| | | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2290 TTTTTCCATATAGGATTTGACATCCGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAA 2349 ||||| || || ||||| |||| || | ||||| |||| ||| ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2350 ATGTGCTGATCGGGTTGGG-GATACCAAGTCGAAGAATCTGTTGTTTTG-ACATTTGAAT 2407 || | || | | ||| |||| | ||| || |||| ||| || | || |||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATC-ATTGATTGGTGCAACAGAAT 1743315 Query 2408 TTTCCTTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTATCGTGTAATTCTCTG 2467 || ||| ||| ||||| || || || | ||| |||||||| || ||||| |||| || Sbjct 1743316 TTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTG 1743375 Query 2468 CAAATTCTTATGAATAATTTGTTTGTTGGAGTA-TTTAGATTTTGTAATTGGGAAAGTGC 2526 || | |||||||||| | ||||| || ||| || || ||| | || ||| || Sbjct 1743376 CACACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGC 1743434 Query 2527 TTCTTCTTTTGTAAGAGAACA-CTGAGGATATGTTAGAAAATAATTTTT 2574 || |||||||| || ||||| || ||| | || || |||| |||||| Sbjct 1743435 ATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 2237 CTAGCTGATCTTCCATCGACTTGGAAAATTCCAAAATCAAGGACGTCTCCGTCTTTTTCC 2296 ||||| ||||||||||||| ||| ||| || |||| | | |||||| || ||||| Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2297 ATATAGGATTTGACATCCGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAATGTGCT 2356 || || ||||| |||| || | ||| | ||||| |||||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2357 GATCGGGTTGGGGATACCAAGTCGAAGAATCTGTTGTTTTG-ACATTTGAATTTTCCTTC 2415 | || | | ||| | | |||||| || || ||| | | || |||||||||| Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCT-TTGATAGGTTCAACAGAATTTTCCTGT 599080 Query 2416 GAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTATCGTGTAATTCTCTGCAAATTCT 2475 ||||| || || ||||||| ||| |||||||| || || |||||||| ||| | ||| Sbjct 599079 GAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCT 599020 Query 2476 TATGAAT 2482 ||||||| Sbjct 599019 TATGAAT 599013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710083670936