Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004648.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq519 122 2e-24 seq1694 89.7 9e-15 seq2957 82.4 1e-12 seq3069 77.0 6e-11 >seq519 Length=3254320 Score = 122 bits (134), Expect = 2e-24 Identities = 255/376 (68%), Gaps = 7/376 (2%) Strand=Plus/Plus Query 2230 CCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTG 2289 || || ||||||||||| || || ||||| || | ||||| | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2290 TCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2349 |||||||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2350 GCTGACCTGGTTGGG-GATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCC 2408 | ||| | ||| |||| | ||| || |||| | ||| |||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2409 TTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGAT 2468 | ||| |||||||| || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2469 TTTGATATATTTCTTGTTGGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCATCTTC 2528 | | || |||| || || ||| ||| ||| ||| | || ||| ||||| || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2529 CTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAGTAATTTTTGGCATTTATTTTAAATGG 2588 || ||||| || || |||| | |||||||| | ||||||| ||||||| |||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA--- 1743497 Query 2589 TCTTGGAGGAGCCATT 2604 |||| ||||||||| Sbjct 1743498 CCTTG--GGAGCCATT 1743511 Score = 80.6 bits (88), Expect = 5e-12 Identities = 123/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1294 TTTCCTCAGGTTGTGGTTGAACTGCACTTGTATGGTTACGATGTCGTGGTTCCTCAGGAA 1353 |||||| || |||| |||||| || | || || || |||||||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1354 TGGCCTCTCGTGGTGCTGGGTTATCTTGAAATAGAGGGGATTTTTGATCGTCCAAGTATA 1413 | | ||| |||| | ||||||||||||||||||| |||| | ||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1414 CACGCCACTCTCGCATTGAGTTACAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1467 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1304 TTGTGGTTGAACTGCACTTGTATGGTTACGATGTCGTGGTTCCTCAGGAATGGCCTCTCG 1363 |||| ||||||||| | ||| || || ||||||||||| | |||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1364 TGGTGCTGGGTTATCTTGAAATAGAGGGGATTTTTGATCGTCCAAGTATACACGCCACTC 1423 | ||| | ||||||||||||||||| ||||| | ||||| ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1424 TCGCATTGAGTTACAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1467 | ||| ||| |||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 >seq2957 Length=4215098 Score = 82.4 bits (90), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1289 AACGCTTTCCTCAGGTTGTGGTTGAACTGCACTTGTATGGTTACGATGTCGTGGTTCCTC 1348 || |||||| | ||||||| ||||||||| | || ||| || ||||| | | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1349 AGGAATGGCCTCTCGTGGTGCTGGGTTATCTTGAAATAGAGGGGATTTTTGATCGTCC-A 1407 ||||| ||| ||||| ||||||||||||||| || || ||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGA-TTTGGTACTTCCTA 1238867 Query 1408 AGTATACACGCCACTCTCGCATTGAGTTACAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1467 ||||| || || | | ||| |||| || |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1468 GATTTGCACAATTTATGCTGAAGTAGTA-GGAACACCCACACGTTAGATCA 1517 || | | || ||| ||||| || || || |||||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq3069 Length=10854949 Score = 77.0 bits (84), Expect = 6e-11 Identities = 127/181 (70%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1288 CAACGCTTTCCTCAGGTTGTGGTTGAACTGCACTTGTATGGTTACGATGTCGTGGTTCCT 1347 ||| |||||||| |||||| |||||| || | || || || ||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1348 CAGGAATGGCCTCTCGTGGTGCTGGGTTATCTTGAAATAGAGGGGATTTTTGATCGTC-C 1406 ||||| ||| ||||| |||| ||||||||| |||||| ||| | | || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGA-TTTGGTACTTCTC 3754519 Query 1407 AAGTATACACGCCACTCTCGCATTGAGTTACAGTGAGTAATTCCCCTGTGCGAAAATCCA 1466 || |||| ||| || | | ||| | || |||||| || ||| |||||||||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1467 T 1467 | Sbjct 3754580 T 3754580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703683903360