Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004650.1 Length=2828 Score E Sequences producing significant alignments: (Bits) Value seq1129 86.0 1e-13 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 214/318 (67%), Gaps = 14/318 (4%) Strand=Plus/Minus Query 1759 CCCTCTCCTGGATTGCAGAGGAAGATAG-TGGGAATTCCACCTTTAATTCGAACTGGCTT 1817 || || |||||||| || | ||||| | ||||| | |||||||||| |||| || || Sbjct 679379 CCTTCACCTGGATTACACAATAAGATTGATGGGAGGTA-ACCTTTAATTAGAACGGGTTT 679321 Query 1818 TCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT 1877 || || || || || |||||| || || || |||| || || || || | ||||| Sbjct 679320 CCCATACTTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTT 679262 Query 1878 ------TAGGTAT-TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGT 1930 || ||| |||| ||| || ||||| ||||| ||||| ||| ||| | Sbjct 679261 CATCTTTAAGTAAGTGGGAGTT-ACATCATCTATGACATTATATGTTGCATCATTGTGGA 679203 Query 1931 ATACTTTTGGGCTTAGATCTAA---ATGCCCACACAAATAATTGTGAGGGCCCAAAGACC 1987 ||||| | | | | |||||| ||| || | ||||| ||| || | | || | Sbjct 679202 ATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGC 679143 Query 1988 TGGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGGTCTAT 2047 |||| | ||||||||||||| |||||||||||||| | || | ||||||| Sbjct 679142 GGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTAT 679083 Query 2048 CCGGCCGCGCAGCGGAAT 2065 | |||| |||| ||| || Sbjct 679082 CTGGCCACGCATCGGTAT 679065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8937265873410