Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004651.1 Length=2714 Score E Sequences producing significant alignments: (Bits) Value seq3069 98.7 2e-17 seq1694 78.8 2e-11 >seq3069 Length=10854949 Score = 98.7 bits (108), Expect = 2e-17 Identities = 228/335 (68%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 1111 CTTCTAATACATTGACATTGTTTATAATAATCACGCCTAATTTAT-CTAAATATTTATTA 1169 || |||||| | ||||| |||| | |||| || || ||| || |||||||||||||| Sbjct 3754256 CTGCTAATATA---ACATTATTTAAACTAATGACTCC-AATACATTCTAAATATTTATTA 3754311 Query 1170 CACTGATATTTAAATACTACTAAGAAGCGCGAGGTCTGAGGATGTAAATGA-GTCCAGAT 1228 ||| | || | | || ||| | || ||| ||| ||| |||| |||||||| Sbjct 3754312 ACATGAAAAGCAAGTCGTTCTCTGAATTGAGAAGTCGAAGG-TGTTAATGTCGTCCAGAT 3754370 Query 1229 TTTGCAGACTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTTGTTGAACTG 1288 ||| | | || | || || | ||| |||||||| |||||| |||||| || Sbjct 3754371 CTTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTG 3754430 Query 1289 TATTTGTAACGTGATTATGTCGTGGTTCCTCCAGAATGGGCTC-TCTGTGTGCCTGGTTA 1347 ||| || | | || |||||||||| | ||||| ||| |||| ||| | |||| Sbjct 3754431 TATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTG-GTGTCATGTTA 3754489 Query 1348 TCTTGAAATATAGGGGATTTTTTACCGTCCAGATATATACGCCACTCTCTGATTGAGTTG 1407 ||||||||||||||||||| ||| || ||||||||| || | | | | || | Sbjct 3754490 ACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCG 3754549 Query 1408 CAGTGAGTAGTTCCCCGGTGCGTGAATCCATTATT 1442 |||||| || ||| ||||| ||| |||| || Sbjct 3754550 TAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1275 TTGTTGTTGAACTGTATTTGTAACGTGATTATGTCGTGGTTCCTCCAGAATGGGCTCTCT 1334 |||| ||||||||||||||| | | || ||||||||||| | |||||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTC-CT 596583 Query 1335 GT-GTGCCTGGTTATCTTGAAATATAGGGGATTTTTTACCGTCCAGATATATACGCCACT 1393 | ||| | |||||||||||||| || ||||| ||| ||| |||||||||| | Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1394 CTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCAT 1438 | | ||| ||||||| ||||||| |||| ||||||| Sbjct 596522 GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575688551840