Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004654.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 272/406 (67%), Gaps = 13/406 (3%) Strand=Plus/Plus Query 2242 ACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATAATCAACGACGTCTCCGTC 2301 || ||| ||||| ||||||||||| | || ||| | | |||| ||| |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2302 TTTCTCCATGTAGGCTTTGACGTCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAA 2361 || || ||||| | ||| || | || | |||| |||| || ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2362 ATGTGCTGACCTAGTTGGGGAGACG-AGGTCGAAGAATCTTTGATTCGTGCACTTGTATT 2420 || | || ||| ||| || | ||| || |||| |||||| ||||| | ||| Sbjct 1743258 TTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2421 TTCCCTCGAACTGGATGAGAACGTGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTGC 2480 | || ||| ||||| || || || | ||| || ||| | |||||||||| ||| Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGC 1743376 Query 2481 AAATTCTGATGAATAATTTATTTGTTATAGTATCTAGGGCTTGT-ATCTGAGAGAGTGCC 2539 | | ||| |||||| | |||||| | ||| | ||||| | | ||| || || Sbjct 1743377 ACACTCTTATGAATTTTAGATTTGT-AGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCA 1743435 Query 2540 TCTTCTTTTGTTAAGGAGCAGTGAGGGTAAGTGAGGAAATAATTTTTGGCATTTATTTGA 2599 || |||||||| | ||| || ||| |||||||||||| ||||||| ||||||| | Sbjct 1743436 TCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTA 1743495 Query 2600 AATCGTTTTGGAGGAGCCATTGACTTGGTCAATTGGTACCAATTGA 2645 || | ||| |||||||| || | || || |||||||||| Sbjct 1743496 AACC---TTG--GGAGCCAT----TTTTTAAAATGTTACCAATTGA 1743532 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1700 CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAC 1759 |||||||| || | | ||||| || ||| ||| ||||||||||| ||||||| ||| Sbjct 599791 CCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATAC 599732 Query 1760 TTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1812 ||| | |||||||| ||| |||| |||| || |||||||| | ||||| Sbjct 599731 TTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTT 599679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726083089876