Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004655.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 seq1694 96.9 6e-17 seq3069 87.8 3e-14 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 137/187 (73%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 1336 TTCCTCAGGTTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCT 1395 ||||| || |||| |||||| ||||||||| | |||||||||||||| |||| | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1396 GGCCTCCTGTCGTGGTTGGTG--ATTTCGAAATAGAGGGGATTTGTTATTTCCCAGGTAA 1453 | ||||| | || || ||| || | ||||||||||| ||||| || |||||| | | Sbjct 1741937 TGTCTCCTCTGGT--TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1454 AAACGCCATTCTTGGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTG 1513 | || ||||| ||| ||| || ||||| ||||||| ||| || ||||||| ||| Sbjct 1741995 ATACACCATTGTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1514 ATGCAGT 1520 | |||| Sbjct 1742054 CTACAGT 1742060 Score = 95.1 bits (104), Expect = 2e-16 Identities = 336/501 (67%), Gaps = 27/501 (5%) Strand=Plus/Plus Query 2139 AAATTACTACTTAAGTTATGATATTGAAAAAT-AAATTCTTTTGGGAGTTTCTCCTTAAT 2197 |||||| | | || ||||||||||| | ||| ||| || |||||| |||||| || || Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTC-TTTGGGTCTTTCTCTTTTAT 1748883 Query 2198 AATTAGAAGTGCTGC-TGCCTTGGAACCTGAGTTTAAT-GCTTCGGCACATGCGTCATTA 2255 ||| | | |||||| | ||||| | | | ||||| ||||| || || | || | Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAA--TTAATCGCTTCAGCGTATACATCTGCA 1748941 Query 2256 GC-ATTGTGGCAGCCGCCTCTAGCCGATCTGGCGTCGATCTGGAATTCGCCCCA--CTCA 2312 | ||| | | | || ||| | ||||| | || || || || || |||| || Sbjct 1748942 ACTATTTTCTTA-CATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTAC 1749000 Query 2313 GTGGTATCCCCATCTTTGTCGATGTAGGACTTGA--CGTCGGAGCTGGATTTAGCTCCTT 2370 | || |||| || || || ||||| || || | | || || | |||||||| || Sbjct 1749001 ATAGTCTCCC--TCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATT 1749058 Query 2371 GAATGTTCGGATGGAAATGTGTTGATCGTGTTGGGGATACCAGGTCGAAGAATCGCTTAT 2430 ||| || |||||||| || | | || | || ||| | | |||||| || | | || Sbjct 1749059 GAACATTTGGATGGAATTGAATGGTTC-TATTAGGGTTTGTATGTCGAAAAACCATTGAT 1749117 Query 2431 TTGTGCATGAGAATTTGCCTTCGAACT-GA-ATAAGCATGTGGAGATGAGGTTGCCCATC 2488 | ||||| ||||||| ||| ||||| || || | || || | ||| |||| ||| | Sbjct 1749118 TGGTGCAGCAGAATTTCCCTGTGAACTAGAGATTA-CA--TGCAAATGTGGTT-CCCGTT 1749173 Query 2489 ATCGTGAAGTTCTCGGCAAACTTTGATGTATTTCTTGTTTGT--GGGAGTTGGGATGTTT 2546 ||| ||||||| ||| ||||| ||| |||| ||||| || ||||| | | ||| Sbjct 1749174 GCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTT 1749233 Query 2547 AATATTTGGGATAATGCTTCGTGTTTAGATAGAGAACAT-TTGGGATATGTGAGAAAATA 2605 | || | | || | || | ||| | || ||||| |||||| | ||||||||||| Sbjct 1749234 GAGATGACGAAGAA--CATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATA 1749290 Query 2606 GTTTTTGGCCTGTATTTTAAA 2626 |||||| | |||| |||| Sbjct 1749291 ATTTTTGCTATTTATTCTAAA 1749311 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1345 TTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCTGGCCTCCTG 1404 |||| ||||||| |||| |||| || ||||||||||| |||| ||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1405 TCGTGGTTGGTGATTTCGAAATAGAGGGGATTTGTTATTTCCCAGGTAAAAACGCCATTC 1464 | ||| || || | ||||||||| |||||| || |||||| | | | |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1465 TTGGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGATGCAGTCGAT 1524 ||| ||| | |||||| ||||||| |||| | ||||||| ||| |||| | || Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAAT 596462 Query 1525 ATG 1527 ||| Sbjct 596461 ATG 596459 >seq3069 Length=10854949 Score = 87.8 bits (96), Expect = 3e-14 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 1333 GCCTTCCTCAGGTTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTC 1392 || ||||| |||||| |||||| ||||||||| ||||||||||||| |||| Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1393 CCTGGCCTCCTGTCGTGGTTGGTGATTTCGAAATAGAGGGGATTTGTTATTTCCCAGGTA 1452 ||| ||||| | ||| || | | |||||| |||||||||| || ||| || || Sbjct 3754465 AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATA 3754524 Query 1453 AAAACGCCATTCTTGGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTT 1512 | ||| |||| ||| | || || ||||| || ||| |||||| ||| ||| ||| Sbjct 3754525 TATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1513 GATGCA 1518 |||| Sbjct 3754585 CTTGCA 3754590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8799671017500