Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004657.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq1129 131 3e-27 seq1694 129 1e-26 seq519 125 1e-25 >seq1129 Length=1508174 Score = 131 bits (144), Expect = 3e-27 Identities = 264/385 (69%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 1616 GCATTCTTGAGGGTCCAGTTTTTGAGTGCTGTGTTCTCCTCTTTGTCCAGGAAATCTTTA 1675 ||||| | ||| ||| | || ||||| || || |||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1676 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGA 1735 || | ||||| ||||| ||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1736 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCCTTTGGGACCCGATTAATTCTTTC 1795 || || || || || |||||||| ||||| | | ||| | ||| || || |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1796 CAGTGCTTTAACTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTC 1854 | ||||| | |||| || |||| || | || ||||| ||||| |||||| | || Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATGTTGCATC 679211 Query 1855 GTTTGAGAACACTCTGGAATTGAAGTCTA---GGTGTCCACTAAGATAATTATGTGGGCC 1911 || ||| ||| ||||| |||| | || || ||| |||||||| || | Sbjct 679210 ATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTC 679151 Query 1912 TAATGCCCGAGCCCACATCGTCTTCCCTGTTCTTGAAT--CACCTTCTACTATGAGACTT 1969 | || || ||| | | || || ||| ||| || | ||||| | || | |||| Sbjct 679150 GAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC--GACTTGGGCCTTCAATGATTATACTT 679093 Query 1970 ACTGGTCTATCTGGGCGCGCAGCGG 1994 ||||||||||| | |||| ||| Sbjct 679092 TTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 129 bits (142), Expect = 1e-26 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1616 GCATTCTTGAGGGTCCAGTTTTTGAGTGCTGTGTTCTCCTCTTTGTCCAGGAAATCTTTA 1675 ||||| | ||| ||||| || ||||| || || ||||||| ||| ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1676 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGA 1735 || ||||| ||||| ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1736 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCCTTTGGGACCCGATTAATTCTTTC 1795 || | || || || ||||||| ||||| || |||| ||| || ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1796 CAGTGCTTTAACTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1844 | ||||| | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 91.5 bits (100), Expect = 2e-15 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1616 GCATTCTTGAGGGTCCAGTTTTTGAGTGCTGTGTTCTCCTCTTTGTCCAGGAAATCTTTA 1675 |||| | ||| | ||| || || || || || |||||||| |||| ||||||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1676 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGA 1735 || ||||| |||| ||||||| | |||||||||||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1736 ACTGGCTTGCCGTATTTGCAATT 1758 || || || || || |||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATT 596128 Score = 78.8 bits (86), Expect = 2e-11 Identities = 177/262 (68%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 2233 TTGCTGGCCTCCTCTAGCAGACCTACCGTCGATTTGAAACTCCCACCACTCAACGGTGTC 2292 ||||| | || |||||||| || || ||||||||||| || | ||| || ||| ||| Sbjct 599270 TTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTC 599211 Query 2293 GCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTCGG 2352 || ||||| || ||||| || || || | ||| |||||| | ||| | | || Sbjct 599210 TCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGG 599151 Query 2353 ATGGAAATGTACTGACCTGGTTGGGGACACCAGATCGAAGAATCTCTGATTCGTGCATTG 2412 |||||| || | | ||| | ||| | ||||| || || |||| || || Sbjct 599150 ATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACA 599092 Query 2413 GTATTTCCCTTCGAATTGGATAAGCACATGCAGATGAGGTTGCCCATCTTCGTGCAATTC 2472 | |||| ||| ||||| || ||| || || | ||| |||| ||| | || ||||| Sbjct 599091 GAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTC 599032 Query 2473 TCTGCAGA-TCTTGATGAATTT 2493 || ||| | |||| |||||||| Sbjct 599031 TCAGCACACTCTT-ATGAATTT 599011 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 171/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 1616 GCATTCTTGAGGGTCCAGTTTTTGAGTGCTGTGTTCTCCTCTTTGTCCAGGAAATCTTTA 1675 ||||| | || |||| || ||||| ||| || ||||| || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1676 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGA 1735 || |||||||||| ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1736 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCCTTTGGGACCCGATTAATTCTTTC 1795 || | || | | |||||||| ||||| || |||| ||| || ||||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1796 CAGTG----CTTTAACTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATAT 1846 || || || | ||||| || ||| || || || ||||||||||| |||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATAT 1742492 Score = 116 bits (128), Expect = 6e-23 Identities = 245/355 (69%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 2233 TTGCTGGCCTCCTCTAGCAGACCTACCGTCGATTTGAAACTCCCACCACTCAACGGTGTC 2292 ||||| | ||| |||||||| || || || |||||||| || || || ||| ||| Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTC 1743191 Query 2293 GCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTCGG 2352 || ||||| |||||||| || || || | ||| ||||||||| || | || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2353 ATGGAAATGTACTGACCTGGTTGGG-GACACCAGATCGAAGAATCTCTGATTCGTGCATT 2411 |||||| || | | ||| | ||| || | | || || |||| ||||| ||||| Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2412 GGTATTTCCCTTCGAATTGGATAAGCACATGCAGATGAGGTTGCCCATCTTCGTGCAATT 2471 | |||| ||| ||| |||||||| ||||||| ||| |||| ||| | ||| | || Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2472 CTCTGCAGA-TCTTGATGAATTTCTTGTTAACTGGTGTTGCT-AGGTTTTGTAATTGGGA 2529 || |||| | |||| |||||||| | | | | | || | | ||| ||| | || Sbjct 1743371 CTTTGCACACTCTT-ATGAATTT-TAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG 1743428 Query 2530 AAGTGCTTCTTCTTTAGTAAGAGAGCA-CTGGGGATAAGTGAGGAAATGGTTCTT 2583 ||| || || ||||| || || || || || |||| ||||||||||||| || || Sbjct 1743429 AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8226901218948