Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004659.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq1129 114 2e-22 seq519 114 2e-22 seq1694 111 3e-21 >seq1129 Length=1508174 Score = 114 bits (126), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 1609 GCATTCTTGATGGTCCAGTTTCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1668 ||||| | || ||| | || |||| | | ||||||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1669 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGA 1728 |||| ||||| ||||| ||||| || | | ||||||||||| ||||| || || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1729 ACGGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1788 ||||| || || || |||||||| ||||| | ||| | | |||| | | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1789 CAGTGTTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATAT 1839 | || || | |||| || |||| || | || ||||| ||||| |||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATAT 679219 >seq519 Length=3254320 Score = 114 bits (126), Expect = 2e-22 Identities = 161/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1622 TCCAGTTTCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCACCCT 1681 |||| || |||| | | | |||||||| || || ||||||||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1682 CACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGT 1741 ||| ||| ||| | |||||||||||||| || ||||| || | |||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1742 ATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTG----TTTT 1797 | |||||||| ||||| || || || |||| | | ||||||||| || | Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1798 AGCTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATAT 1839 | ||||| || ||| || || || ||||||||||| |||||| Sbjct 1742451 ATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATAT 1742492 Score = 87.8 bits (96), Expect = 3e-14 Identities = 251/373 (67%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 2227 TGCTGGCCTCCTCTAGCAGATCTGCCGTCGATTTGGAATTGCCCCCATTCAATAGTA-TC 2285 |||| | ||| ||||||||||| || || ||||| || | | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGTC 1743191 Query 2286 GCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGG 2345 || ||||| |||||||| || || || | ||| ||||||||| |||| || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2346 ATGGAAATGTACTGACCTGGTTGGG-GACACCAGATCGAAGAATCTGTTATTCGTGCATT 2404 |||||| || | | ||| | ||| || | | || || |||| | ||| ||||| Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2405 GGTACTTCCCTTCGAACTGGATGAGCACATGCTGATGAGGTTCCCCATTTTCGTGCTTAT 2464 | | || ||| ||| ||||| || |||||| ||| |||||||| || ||| | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2465 CTCTGGA-AATCTTGATGAACTTCTTGTTGACTGGAGTTGTT-AGGGTTTGGAATTGGGA 2522 || || | | |||| ||||| || | | | | | || ||| ||| ||| || || Sbjct 1743371 CTTTGCACACTCTT-ATGAA-TTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG 1743428 Query 2523 AAGTGCTTCCTCTTTAGTTAAAGAGCA-CTGGGGATATGTGAGGAAATAGTTTTTGGAGT 2581 ||| || || ||||| || | || || || |||| | |||||||||| |||||| | Sbjct 1743429 AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTAT 1743487 Query 2582 TCACTCTAAATCT 2594 | | |||||| || Sbjct 1743488 TTATTCTAAACCT 1743500 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1609 GCATTCTTGATGGTCCAGTTTCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1668 ||||| | || ||||| || |||| | | |||||||||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1669 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTTATCTGA 1728 ||| ||||| ||||| ||||| || | |||||||||| ||| | | ||| || ||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1729 ACGGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1788 || | || || || ||||||| ||||| || || || |||| | || ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1789 CAGTGTTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1837 | || || | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 91.5 bits (100), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1642 TTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1701 ||||||||||| || | ||||||| | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1702 ATTGATGGGATCCCTCCTTTTATCTGAACGGGCTTGCCGTATTTGCAATT 1751 ||||||||||| || ||||| || | |||||| || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8220501451372