Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004661.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq1129 122 1e-24 seq1694 111 3e-21 seq519 109 9e-21 >seq1129 Length=1508174 Score = 122 bits (134), Expect = 1e-24 Identities = 244/356 (69%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 1651 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1710 ||||||||||| | |||||||||||||||| ||||| ||||| ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1711 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAG 1770 |||||||||| ||||||||| |||| || || || ||||| ||||| ||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1771 TCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACG 1830 || || || ||||| | | |||||| | ||||| | ||||| || || | || Sbjct 679295 TCTTTTTGCCCCCA-ATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1831 TCATCAATGACGTTATACTCCACTTCGT--TCGAATAGACTCTTGGGTTGAAGTCCA--- 1885 ||||| ||||| ||||| | || | | |||| ||| | |||||| || | Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTGTGGAAT--ACTGATTTGTTGAAATCTAAGT 679179 Query 1886 GATGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTTC 1945 |||| || ||| |||||||| || | | | || ||| | | || || ||| | Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT-- 679121 Query 1946 TCGAAT--CACCTTCCACGATGATACTAACAGGTCTCTCTGGGCGCGCAGCGGAAT 1999 |||| | ||||| | ||| ||||| |||||| ||||| | |||| ||| || Sbjct 679120 TCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGGTAT 679065 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1651 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1710 |||||||||| | | |||||||||||||| ||||| ||||| ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1711 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAG 1770 ||||||| ||| | | |||||||||||| | || || ||||| |||| ||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1771 TCCTTCTGGCCCCAGAAAGATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACG 1830 || || || ||| | | |||||||| | ||||| | ||||| || || || | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCA 599654 Query 1831 TCATCAATGACGTTAT 1846 ||||||||| | |||| Sbjct 599653 TCATCAATGTCATTAT 599638 Score = 95.1 bits (104), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1651 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1710 ||||||||||| | || ||||||| | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1711 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTACAATT 1760 ||||||||||| || |||||||||| ||| || || || ||||| ||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 109 bits (120), Expect = 9e-21 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 1651 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1710 |||||||| || | ||||||||||||||| |||||||||| ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1711 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAG 1770 ||||||||||| || |||||||||| ||| | || | |||| ||||| ||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAA 1742410 Query 1771 TCCTTCTGGCCCCAGAAAGATTCTTTCCAGTG----CTTTAGCTTTAGATATTGCGGTGC 1826 || || || ||| | |||||||||| || || | ||||| ||| || || Sbjct 1742411 TCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGC 1742470 Query 1827 GACGTCATCAATGACGTTATA 1847 || ||||||||||| ||||| Sbjct 1742471 TACATCATCAATGACATTATA 1742491 Score = 105 bits (116), Expect = 1e-19 Identities = 247/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 2231 CTGTTTGCTGACCTCCCCTAGCAGATCTACCGTCGACCTGGAATTCTCCCCATTCAATGG 2290 || |||||| || ||||||||||||||| || || | || || || | || || | | Sbjct 1743128 CTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGT 1743187 Query 2291 TGTCCCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGT 2350 ||| || ||||| |||||||| || || |||| ||| | ||||||| |||| | Sbjct 1743188 AGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACAT 1743247 Query 2351 TCGGATGGAAATGTACTGACCTGGTTGGG-GACACCAGATCGAAGAGTCTGTTATTCGTG 2409 | ||||||| || | | ||| | ||| || | | || || | || | ||| ||| Sbjct 1743248 TTTGATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTG 1743306 Query 2410 CATTGGTACTTCCCTTCGAACTGGATGAGCACATGCAGATGAGGTTCCCCATTCTCATGC 2469 || | | || ||| ||| ||||| || ||||||| ||| |||||||| || || Sbjct 1743307 CAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGT 1743366 Query 2470 AATTCTCTGCAGA-TCTTGATGAACTTCTTGTTAACTGGAGT--TTGTAGGTTTTCTAAT 2526 | |||| |||| | |||| ||||| || | | | | | || ||| ||| ||| | Sbjct 1743367 AGTTCTTTGCACACTCTT-ATGAA-TTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGA 1743423 Query 2527 TGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCA-CTGGGGATATGTGAGGAAATAATTTTT 2585 || ||| || || ||||| || || || || || |||| | |||||||||| |||||| Sbjct 1743424 TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 Query 2586 G 2586 | Sbjct 1743483 G 1743483 Score = 78.8 bits (86), Expect = 2e-11 Identities = 241/363 (66%), Gaps = 15/363 (4%) Strand=Plus/Plus Query 2231 CTGTTTGCTGACCTCCCCTAGCAGATCTACCGTCGACCTGGAATTCTCCCCATTCAATGG 2290 || ||| || || ||||||| ||||||| || || | || || || |||| || | Sbjct 1748943 CTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACAT 1749002 Query 2291 TGTCCCCGTCCTTGTCGATGTAGGACTTGAC--ATCGGAGCTGGATTTAGCTCCCTGAAT 2348 ||| || ||||| || ||||| || || || ||| || | |||||||| |||| Sbjct 1749003 AGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAAC 1749062 Query 2349 GTTCGGATGGAAATGTACTGACCTGGTTGGGGACACCAGATCGAAGAGTCTGTTATTCGT 2408 || |||||||| || | | || || ||| | ||||| | | | ||| || Sbjct 1749063 ATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGT 1749121 Query 2409 GCATTGGTACTTCCCTTCGAACTGGATGAGCACATGCAGATGAGGTTCCCCATTCTCATG 2468 ||| | | |||||| ||||| || || ||||||| ||| ||||||| | || || Sbjct 1749122 GCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TG 1749179 Query 2469 CAATTCTCTGCAGATCTTGATGAACTTC----TTGTTAACTGGAGTTTGTAGGTTTTCTA 2524 | ||||||||| | || ||||| || |||| | | |||| ||||||| | Sbjct 1749180 TAGTTCTCTGCACACTTTTATGAATTTAAGATTTGT--AGGGTAGTTG--AGGTTTTTGA 1749235 Query 2525 ATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAGCA-CTGGGGATATGTGAGGAAATAATTT 2583 || ||| | || ||||| || || | || || |||| | ||||| ||||||||| Sbjct 1749236 GATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAA-GTGAGAAAATAATTT 1749294 Query 2584 TTG 2586 ||| Sbjct 1749295 TTG 1749297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8249300405464