Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004673.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq3069 77.0 6e-11 >seq3069 Length=10854949 Score = 77.0 bits (84), Expect = 6e-11 Identities = 174/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 1222 AGTCGGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGTATTTCCAG 1281 ||||| ||| ||| ||||||||||| ||| || | ||| || | || || Sbjct 3754344 AGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAA 3754403 Query 1282 AGCTTTCCGTAGGTTGTAGTTGAAATGGATCCTGAGTGTTATTATGTCCATGTTCGTCGT 1341 ||||||| |||||| ||||||| || ||| || ||| ||||| || |||| || Sbjct 3754404 GGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCG-TGGTCGTTGT 3754462 Query 1342 GAA-TGGACGGTTGTCGTGGTTGAGGAT--CTTGAAATAGAGGGGATTTGGAACCTTCCA 1398 || ||| | | | ||| | | | | ||||||||| ||||||||||| || | || Sbjct 3754463 TAAATGGTCTCCTCTGGTG--TCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1399 GATATAGACGCCATTCTTTGCTTGAGCTGCAGTGATGCGTTCCCCTGTGCGAGAATCCAT 1458 ||||| ||| |||| || | ||| | ||||| || ||| |||||| ||| ||| Sbjct 3754521 AATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 Query 1459 GGTTGTGGCAGTTGATG 1475 ||| | ||| || ||| Sbjct 3754581 TGTTCTTGCAATTAATG 3754597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655685646540