Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004674.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq1694 86.0 1e-13 seq519 86.0 1e-13 seq3069 77.0 6e-11 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1343 TTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCTGGCCTCTTG 1402 |||| ||||||| |||| |||| || ||||||||||| |||| ||| || | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1403 TCGTGGTCG-GTGATTTCGAAATAGAGGGGATTTGTTATGTCCCAGGTAAAAACGCCATT 1461 | || |||| || || | ||||||||| |||||| || ||||| | | | |||||||| Sbjct 596581 TAGT-GTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1462 CCTTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGATGCAGTCG 1520 |||| ||| | |||||| ||||||| |||| | ||||||| ||| |||| | Sbjct 596522 -GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTA 596464 Query 1521 ATATG 1525 ||||| Sbjct 596463 ATATG 596459 >seq519 Length=3254320 Score = 86.0 bits (94), Expect = 1e-13 Identities = 135/187 (72%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 1334 TTCCGAAGGTTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCT 1393 |||| || |||| |||||| ||||||||| | |||||||||||||| |||| | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1394 GGCCTCTTGTCGTGGTCG-GTGATTTCGAAATAGAGGGGATTTGTTATGTCCCAGGTAAA 1452 | ||| | | || ||| || || | ||||||||||| ||||| || ||||| | | | Sbjct 1741937 TGTCTCCTCTGGT-TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1453 AACGCCATTCCTTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTG 1511 || ||||| |||| ||| || ||||| ||||||| ||| || ||||||| ||| Sbjct 1741996 TACACCATT-GTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1512 ATGCAGT 1518 | |||| Sbjct 1742054 CTACAGT 1742060 >seq3069 Length=10854949 Score = 77.0 bits (84), Expect = 6e-11 Identities = 160/236 (68%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1282 TAAGGTCGTCCAGACCTTGAAGTTGAGAAAACACTTGTGAATCCCCAATGCCTTCCGAAG 1341 ||| |||||||||| |||||| | | ||| |||| ||| || |||| || Sbjct 3754356 TAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAG 3754415 Query 1342 GTTGTGGTTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCTGGCCTCTT 1401 |||| |||||| ||||||||| ||||||||||||| |||| ||| ||| | Sbjct 3754416 GTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTCTCCT 3754475 Query 1402 GTCGTGGTCGGTGATTTCGAAATAGAGGGGATTTGTTATGTCCCAGGTAAAAACGCCATT 1461 | ||| || | | |||||| |||||||||| || || || || | ||| |||| Sbjct 3754476 CTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCATT 3754535 Query 1462 CCTTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGATGCA 1516 |||| | || || ||||| || ||| |||||| ||| ||| ||| |||| Sbjct 3754536 -GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCA 3754590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8844469342680