Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004675.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq519 96.9 6e-17 seq1694 89.7 9e-15 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 152/224 (68%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 1304 TTCCGGAGGTTGTGGTTGAACCGTATCTGGATCGATATGATGTCGTGGTTCGTGNNNNNN 1363 |||| ||| |||| |||||| |||||||||| ||||||||||||||| || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1364 NNNNNNNNNNNNNNNNNGATAATCTTGAAATAGAGGGGATTTGTTATCTCCCAAATATAG 1423 | |||||||||||||||| ||||| || |||||| ||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1424 ACGCCATTCTGGGCCTGATGAGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCT 1483 || ||||| | | |||| | ||||| ||||||||||| | |||||||| ||| || Sbjct 1741997 ACACCATTGTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCT 1742055 Query 1484 GCAGTCGATGTGGAGGTAATATGTACACCCGCAATCAAGATCAA 1527 |||| ||||| |||||||| | || || || | | ||||| Sbjct 1742056 ACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 82.4 bits (90), Expect = 1e-12 Identities = 267/403 (66%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 2238 TCCTCTAGCACTTCTGCCGTCGACCTGGAATTCTCCCCATTCAAGTGTGTCTCCATCCTT 2297 ||| ||| || ||| || || | || || || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2298 GTCGATGTAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAA 2355 || ||||| || || || || || | |||||||| |||| ||||||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2356 TGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAATCGGTGATTCTTGCAGTTGAATTTT 2415 || | || || ||| | | |||||| || | ||||| ||||| |||||| Sbjct 1749076 TGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2416 CTCTCGAACTGAATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAG 2475 | ||||| | | || || | ||| |||| ||| || |||||| |||||||| Sbjct 1749135 CCTGTGAACT-AGAGATTACATGCAAATGTGGTT-CCCGTTGCTGTGTAGTTCTCTGCAC 1749192 Query 2476 ATTTTGATGTATTTTTTATTGGT-GGGTGTTTCAAGGTTTAATAATTG--GGAGAGTGAC 2532 | ||| ||| |||| ||| || |||| || |||||| | || | ||| || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTT-GAGGTTTTTGAGATGACGAAGA---AC 1749248 Query 2533 -TCTTCCTTTGTGAGAGAGCATTTTGGATATGTGACGAAATAGTTTTTGGAATTTATTTG 2591 || || |||||||| | ||| |||| | |||| ||||| |||||| ||||||| Sbjct 1749249 ATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCT 1749308 Query 2592 AAAGCGCTTCGGAGGAGCCATTTGGTCAATGGGTACCGATTGA 2634 ||| || |||||||||| |||| | |||||||||| Sbjct 1749309 AAACATGTTATTGGGAGCCATTT-TTCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1385 ATCTTGAAATAGAGGGGATTTGTTATCTCCCAAATATAGACGCCATTCTGGGCCTGATGA 1444 |||||||||||||| |||||| || |||||| ||| |||||||| | | | || Sbjct 596569 ATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTGTTGCACCGAGCC 596510 Query 1445 GCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCTGCAGTCGATGTGGAGGTAATA 1504 |||||| ||||||| |||| |||||||| ||| ||||| | || || ||||||| Sbjct 596509 ACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAATATGTTGGTAATA 596450 Query 1505 TGTACACCCGCAATCAAGATCA 1526 ||| || || |||| | |||| Sbjct 596449 TGTGCAACCACAATATATATCA 596428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8738873290470