Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004732.1 Length=2662 Score E Sequences producing significant alignments: (Bits) Value seq519 131 3e-27 seq1694 122 1e-24 >seq519 Length=3254320 Score = 131 bits (144), Expect = 3e-27 Identities = 188/262 (72%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1489 AATTGGGCATTTTTTAGTGTCCACTCTCTT-AGTGCTGCATTTTCAGCTTTGTCGAGAAA 1547 |||| ||||||| ||| |||| | |||| || ||| ||||||| | || || || || Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1548 CTCTTTATAGCTGGCCCCCTCTCCGGGATTGCAAAGCACTATTGATGGGATTCCACCTTT 1607 ||||||||| || ||||| | ||| ||| | || ||||||||||| |||||||| Sbjct 1742311 ATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1608 AATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAA 1667 ||||| ||| | || | | | || || || ||||| || |||| |||||||||| Sbjct 1742371 AATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1668 TTCTTTCCAGTG----CTTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTAT 1723 ||||||||| || || | |||||| || ||||| || ||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1724 ACTTGACGTCATTTGAGAAAAC 1745 | | | ||||| |||| || Sbjct 1742491 ATGTTGCATCATTGCAGAATAC 1742512 >seq1694 Length=789422 Score = 122 bits (134), Expect = 1e-24 Identities = 209/298 (70%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 1489 AATTGGGCATTTTTTAGTGTCCACTCTCTT-AGTGCTGCATTTTCAGCTTTGTCGAGAAA 1547 |||| ||||||| || ||||| | |||| || || ||||||| ||| || | || Sbjct 599872 AATTATGCATTTTGGAGCGTCCAAT-TCTTGAGGGCCACATTTTCCTCTTCATCCGGGAA 599814 Query 1548 CTCTTTATAGCTGGCCCCCTCTCCGGGATTGCAAAGCACTATTGATGGGATTCCACCTTT 1607 ||||||||| || || || || ||||| || | || ||||||| ||| ||| ||| Sbjct 599813 ATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTT 599754 Query 1608 AATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAA 1667 ||||||||| | || ||||| || || | ||||| || |||| ||||||| || Sbjct 599753 AATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAA 599694 Query 1668 TTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTATACTT 1727 ||||||| | ||||| | |||||| ||| ||||| | ||||||||| | |||| || Sbjct 599693 TTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT-CTG 599635 Query 1728 G-ACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGGTGTCCACTCAAATAGTTATG 1784 | | ||||| |||| || ||||||||| ||| || || | || ||||| Sbjct 599634 GTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8409294594864