Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004824.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3069 82.4 1e-12 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1266 CTTGTGAAGTCCCAGCGCTTTCCTCAGGTTGTGGTTGAACAGTATCTGTACCACTATTAT 1325 ||| |||| | || |||||||| |||||| |||||| ||||||| | | |||| || Sbjct 3754389 CTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGAT 3754448 Query 1326 GTCGTGTTCTGTCATGAAGGGTCGGCTGTCGTGTTTCAATATTTTGAAATACAGGGGATT 1385 |||||| || | | || |||| || | |||| || |||||||| |||||||| Sbjct 3754449 GTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATT 3754508 Query 1386 TGGAATTTCCCAAATAAAGACGCCA 1410 ||| | ||| |||||| | ||| || Sbjct 3754509 TGGTACTTCTCAAATATATACGTCA 3754533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665285297904