Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005031.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 seq1129 95.1 2e-16 seq1694 93.3 7e-16 seq2957 91.5 3e-15 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 251/370 (68%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 2245 TCTTCCGTCGACCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAAGA 2304 |||||| || | || || || |||| || | |||||| ||||| || || || || Sbjct 1748968 TCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGA 1749027 Query 2305 CTTGACG--TCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTG 2362 || || || || |||||||||| |||| || |||||||| || | || Sbjct 1749028 TTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTA 1749087 Query 2363 GTAGGGGATGTAAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTCCCTTCGAACTGG 2422 ||||| |||| | ||||| || | | ||| ||| |||||||||| ||||| | Sbjct 1749088 TTAGGGTTTGTATG-TCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAG 1749146 Query 2423 ATAAGCACGTGCAGATGAGGGCTCCCATCTTCATGGAGTTCTCTGCAGATTTTGATGAAT 2482 | | || |||| ||| || |||| | || ||||||||||| | ||| |||||| Sbjct 1749147 AGATT-ACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAAT 1749204 Query 2483 TTTTTATTTGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTGAGA 2542 || |||||| ||| ||| ||||||| | || ||| | || ||||| ||||| Sbjct 1749205 TTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGT 1749264 Query 2543 GAGCACTGTGGGTATGTGAGGAAATAATTTTTGGCATTTATT-AAAAAACGT--TTGGGA 2599 | || |||| | ||||| |||||||||||| ||||||| ||| | || |||||| Sbjct 1749265 AAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATTGGGA 1749324 Query 2600 GGTGCCATTT 2609 ||||||| Sbjct 1749325 ---GCCATTT 1749331 Score = 89.7 bits (98), Expect = 9e-15 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1298 TTTCCTCAGGTTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTGTTGAA 1357 |||||| || |||| ||||| ||||| |||| ||||| |||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1358 TATTCTCTCGTGGTG-CTTGATTATCTTGAAATAGAGGGGATTTTTGATCGTCCAGGTAT 1416 | |||| |||| | || |||||||||||||||||| |||| | ||| | || Sbjct 1741936 TTGTCTCCTCTGGTTTCGTG-TTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1417 ACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTAAATCCAT 1471 | || ||| | | ||| |||| |||||| |||||| ||| | |||||||| Sbjct 1741995 ATACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 82.4 bits (90), Expect = 1e-12 Identities = 125/177 (71%), Gaps = 12/177 (7%) Strand=Plus/Plus Query 1695 GATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGG 1754 ||| ||| | | ||| | |||||| ||||||||||||| || |||||| ||||| Sbjct 1742337 GATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGC 1742396 Query 1755 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTG----------CTTT 1804 || |||||||| || |||| |||| || |||||||| | || |||| Sbjct 1742397 AATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTT 1742456 Query 1805 AAGTA-GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTGCTGTATAC 1860 ||||| ||||| | | || ||||||||||| || || |||||||||| | |||| Sbjct 1742457 AAGTATGTGGGAG-CTACATCATCAATGACATTATATGTTGCATCATTGCAGAATAC 1742512 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1298 TTTCCTCAGGTTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTGTTGAA 1357 |||||| | ||||| ||||||||||| ||||| ||||| || |||| || ||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1358 TATTCTCTCGTGGTGCTTGATTATCTTGAAATAGAGGGGATTTTTGATCGTCCAGGTATA 1417 |||| ||||| | |||||||| ||||| ||||| ||| | ||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1418 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTAAATCCAT 1471 |||||| | | || | ||| ||| |||| ||| ||| || || |||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCAT 693604 Score = 84.2 bits (92), Expect = 4e-13 Identities = 205/305 (67%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 2282 TCTCCGTCCTTGTCGATATAAGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTC 2341 ||||| ||||| || || || || || || || ||| | ||||||| |||| || Sbjct 695205 TCTCCCTCCTTTTCAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTT 695146 Query 2342 GGATGGAAATGTGCTGACCTGGTAGGGGATGTAAGGTCGAAGAATCTGTTATTT-TGGCA 2400 | |||||| | | || ||||| | | | |||||| || || | ||| ||| | Sbjct 695145 GTATGGAATTAGATAGTTTTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGGAA 695086 Query 2401 CTTGAATTTCCCTTCGAACTGGATAAGCACGTGCAGATGAGGGCTCCCATCTTCA-TGGA 2459 | |||||||| | |||||||| ||| | |||| || | || |||| | | || | Sbjct 695085 CA-GAATTTCCTTGTGAACTGGAGAAGTATGTGCGAAT-ATGGTTCCCCGTTGCTGTGTA 695028 Query 2460 GTTCTCTGCAGATTTTGATGAATTTTTTATTTGTTGGGGTGTTTAGGTTTTGTAATTGGG 2519 ||| ||| || | ||||||||| ||||||| ||| ||| ||| ||| | || Sbjct 695027 GTTTTCTACACTT----ATGAATTTTATATTTGTAGGGTAGTTGAGGATTTTGAGATGAT 694972 Query 2520 AAAGTGCTTCTTCTTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAATAATTTTTGGCAT 2579 ||| | || ||| | | |||||| || ||| | ||||||||||| |||||| || Sbjct 694971 GAAGACCATCATCTATTGAGAGAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTAT 694912 Query 2580 TTATT 2584 ||||| Sbjct 694911 TTATT 694907 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 2377 GTCGAAGAATCTGTTATTTTGGCACTTGAATTTCCCTTCGAACTGGATAAGCACGTGCAG 2436 |||||| || | | ||| ||| | |||||||||| |||||||| ||| ||||||| Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2437 ATGAGGGCTCCCATCTTCA-TGGAGTTCTCTGCAGATTTTGATGAATTTTTTATTTGTTG 2495 ||| || |||| | | || ||||||||||| | | |||||||| |||||| Sbjct 588189 ATGTGGT-TCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAA 588131 Query 2496 GGGTGTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCACTGTGGGT 2555 | ||| ||||||| | || ||| | || ||||| | |||||| || |||| Sbjct 588130 GATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA 588071 Query 2556 ATGTGAGGAAATAATTTTTGGCATTTATTAAAAAACGTTTGGGAGGTGCCATTT 2609 | ||||||||||| |||| | ||||||| ||| | || ||| ||||||| Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTTCGGA---GCCATTT 588020 Score = 93.3 bits (102), Expect = 7e-16 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1308 TTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTGTTGAATATTCTCTCG 1367 |||| |||||||||||| ||||| ||| | |||||||||| |||||||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1368 TGGTG-CTTGATTATCTTGAAATAGAGGGGATTTTTGATCGTCCAGGTATACACGCCACT 1426 | ||| | || |||||||||||||||| ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTG-TTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1427 CTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTAAATCCAT 1471 | ||| ||| ||||||| |||||| |||| |||||||| Sbjct 596522 GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 86.0 bits (94), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 1296 GCTTTCCTCAGGTTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTGTTG 1355 |||||||| | || || ||||||| ||| |||| ||||| |||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1356 AATATTCTCTCGTGGTG-CTTGATTATCTTGAAATAGAGGGGATTT 1400 ||| |||| ||||| | || ||||||||||||||||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATG-TTATCTTGAAATAGAGGGGATTT 600128 Score = 78.8 bits (86), Expect = 2e-11 Identities = 197/297 (66%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 1610 AATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTAC 1669 |||| |||||| | | | ||| | || | ||| ||| | |||||| ||| | | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1670 TCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTA 1729 |||||||| || | | |||||||| || | | ||| | || ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1730 ATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1789 ||||||| ||||||| |||||| | |||||||| || |||| |||| || ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1790 TCTTTAAAGTG------CTTTAAGT-AGTGGGGGTCGACGTCATCAATGACGTTGTACCA 1842 ||||| | || |||||||| |||||| | | | ||||||||| | || | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAG-CTGCATCATCAATGTCATTATCTGG 599634 Query 1843 GGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTATG 1899 |||||||| | |||| | | | | ||| | ||||||| | |||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 >seq2957 Length=4215098 Score = 91.5 bits (100), Expect = 3e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 1293 AACGCTTTCCTCAGGTTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTG 1352 || |||||| | ||||||| ||||||||||| |||| ||||| || | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1353 TTGAATATTCTCTCGTGGTG-CTTGATTATCTTGAAATAGAGGGGATTTTTGATCGTCC- 1410 |||||| |||| ||||| | || |||||||||||||| || || ||| | | ||| Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATG-TTATCTTGAAATAGCGGAGA-TTTGGTACTTCCT 1238866 Query 1411 AGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTAAATCCA 1470 ||||||| || || | | ||| |||| ||| |||| | | | ||||| ||||||| Sbjct 1238867 AGGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1471 T 1471 | Sbjct 1238927 T 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697284135784