Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005032.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq519 122 2e-24 seq1694 96.9 6e-17 seq2957 89.7 9e-15 seq1129 87.8 3e-14 >seq519 Length=3254320 Score = 122 bits (134), Expect = 2e-24 Identities = 341/510 (67%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 2095 GAGGTGCAAAGATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACAAAATCTT 2154 |||| || || || | | | ||||| | ||| ||||||||| |||||| || ||| | Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2155 TTGGAGCTAACTCCCTAATTACATTAAGAGCCTCCGACTTACTTCCTGTGT---TAATTG 2211 |||| || ||| | |||| | | || | | || ||| || | |||| | Sbjct 1748865 TTGGGTCTTTCTCTTTTATTATTTGTAATGC-TGCATCT--CTTGGTGCATAATTAATCG 1748921 Query 2212 CTTTGGCGTAAGCATCATTGGCTGATTGTTGACCCCCTCTAGCAGATCTTCCATCGATCT 2271 ||| ||||| |||| || || | || || ||| ||||||||||||| || | Sbjct 1748922 CTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTT 1748981 Query 2272 GAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCAATATATGATTTGA--CGTCGGA 2329 |||| ||| |||| || | |||||| ||||| ||||| |||||||| | | || | Sbjct 1748982 GAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAA 1749041 Query 2330 GCTTGATTTAGCTCCCTGTATGTTTGGATGGTAATGTGCTGACCTTGTTGGGGATACCAG 2389 | |||||||||| || | ||||||||| ||| || | || ||| | | Sbjct 1749042 GGTTGATTTAGCATATTGAACATTTGGATGG-AATTGAATGGTTCTATTAGGGTTTGTAT 1749100 Query 2390 ATCGAAGAATCTCTTATTCGTGCATCTGTATTTCCCTTCGAACTGGATGAGCACATGGAG 2449 ||||| || | | ||| ||||| | | |||||||| ||||| || || ||||| | Sbjct 1749101 GTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAA 1749159 Query 2450 ATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATTTTGATGAATTTTTTGTTTGTTAC 2509 ||| || |||| | ||| ||||||||||| | ||| |||||||| |||| || Sbjct 1749160 ATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTG-TAG 1749217 Query 2510 AGTA-TCTAGCGTCTTTATCTGGGCAAGGGTTTCCTCTTTTGTAAGACAGCAT-TTGGGA 2567 ||| | || | || | || ||| || |||||||| || | ||| |||||| Sbjct 1749218 GGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA 1749277 Query 2568 TATGTAAGAAAATAATTTTTGGCATTTATT 2597 | || ||||||||||||||| ||||||| Sbjct 1749278 -AAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Score = 120 bits (132), Expect = 5e-24 Identities = 269/396 (68%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 2205 TTAATTGCTTTGGCGTAAGCATCATTGGCTGATTGTTGACCCCCTCTAGCAGATCTTCCA 2264 ||||| ||||| | ||| |||| || ||| | || || ||||||||||||||| Sbjct 1743100 TTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCA 1743159 Query 2265 TCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCAATATATGATTTGACG 2324 || || ||||| ||| | || || | | |||||| ||||| || || |||||||| || Sbjct 1743160 TCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACA 1743219 Query 2325 TCGGAGCTTGATTTAGCTCCCTGTATGTTTGGATGGTAATGTGCTGACCTTGTTGGG-GA 2383 | ||| ||||||||| || | ||| ||||| | || | || | ||| || Sbjct 1743220 TTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGA 1743279 Query 2384 TACCAGATCGAAGAATCTCTTATTCGTGCATCTGTATTTCCCTTCGAACTGGATGAGCAC 2443 || | || || |||| | ||| ||||| | | |||| ||| ||| ||||| || || Sbjct 1743280 TA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTAC 1743338 Query 2444 ATGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATTTTGATGAATTTTTTGTT 2503 ||| | ||| || ||| | ||| |||||| |||| | | | ||||||||| || Sbjct 1743339 ATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATT 1743398 Query 2504 TGTTACAGTA-TCTAGCGTCTTTATCTGGGCAAGGGTTTCCTCTTTTGTAAGACAGCAT- 2561 || || ||| | || | || | || ||| | || |||||||| || | ||| Sbjct 1743399 TG-TAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATC 1743457 Query 2562 TTGGGATATGTAAGAAAATAATTTTTGGCATTTATT 2597 |||||| | || || |||| ||||||| ||||||| Sbjct 1743458 TTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Score = 89.7 bits (98), Expect = 9e-15 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1311 TTTCCTCAGGTTGTGGTTGAACTGTATTTGTACTGTTATGATATCGTGGTTTTTCAAGAA 1370 |||||| || |||| |||||| ||||| || | | |||||| |||||||| || || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1371 CGGCATCTTGTCGTGTTGGGATATCTTGAAATAAAGGGGATTTGTTATCGTCCAGGTATA 1430 | || | | || | | | |||||||||||| |||| ||||| || ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1431 TACGCCATTCTCTGC-CTGAGCTGCAGTGATGGGTTCCCCTGTGCGAGAATCCAT 1484 ||| ||||| | ||| |||||| ||||| ||||||| ||| || ||||||| Sbjct 1741996 TACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1321 TTGTGGTTGAACTGTATTTGTACTGTTATGATATCGTGGTTTTTCAAGAACGGCATCTTG 1380 |||| ||||||||||||||| | ||| || |||||||| || ||| || || | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1381 TCGTGTTGGGATATCTTGAAATAAAGGGGATTTGTTATCGTCCAGGTATATACGCCATTC 1440 | |||| | | |||||||||||| || |||||| || ||| | |||||||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1441 TCTGC-CTGAGCTGCAGTGATGGGTTCCCCTGTGCGAGAATCCAT 1484 | ||| | |||| |||||| ||||||| |||| | ||||||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 89.7 bits (98), Expect = 9e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 2250 CTAGCAGATCTTCCATCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCA 2309 |||||||||||||||||||| ||||| |||||||| || | | |||||| ||||| ||| Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2310 ATATATGATTTGACGTCGGAGCTTGATTT 2338 || |||||||| || | ||| |||||| Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTT 599169 Score = 84.2 bits (92), Expect = 4e-13 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1623 AATTCTGCATTTTTTAGTGCCCAGTCTTTGAGTGGAGAATTTTTATCCTCATCCAAGTAC 1682 |||| |||||||| || | ||| | ||||| | ||||| || |||||| | | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1683 TCTTTATACGACGATGTAGGTCCTGGATTGCATAGGAAGATTGTTGGGATCCCACCTTTA 1742 |||||||| |||| |||||||| || | | ||||| || ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1743 ATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAAC 1802 ||||||| ||||||| ||||| | |||||||| || |||| |||| ||||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1803 TCTTTAAAATGCTT 1816 ||||| | ||||| Sbjct 599692 TCTTTCTATTGCTT 599679 >seq2957 Length=4215098 Score = 89.7 bits (98), Expect = 9e-15 Identities = 136/183 (74%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 1306 AACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGTACTGT-TATGATATCGTGGTTTTT 1364 || |||||| | ||||||| |||||||||||| || | ||| |||||| | | | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGA-TGTCTATGATGTTGAGTTTGTT 1238807 Query 1365 CAAGAACGGCATCTTGTCGTGTTGGGATATCTTGAAATAAAGGGGATTTGTTATCGTCC- 1423 ||| | || | | |||| | |||||||||||| || |||||| || | ||| Sbjct 1238808 GTTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTA-CTTCCT 1238866 Query 1424 AGGTATATACGCCATTCTCTGC-CTGAGCTGCAGTGATGGGTTCC-CCTGTGCGAGAATC 1481 |||||||||| |||| | ||| |||||| ||| ||| || |||| | |||||| |||| Sbjct 1238867 AGGTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATC 1238924 Query 1482 CAT 1484 ||| Sbjct 1238925 CAT 1238927 >seq1129 Length=1508174 Score = 87.8 bits (96), Expect = 3e-14 Identities = 170/249 (68%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 1623 AATTCTGCATTTTTTAGTGCCCAGTCTTTGAGTGGAGAATTTTTATCCTCATCCAAGTAC 1682 ||||||||||||| || | | | | ||||| | | ||||| || | ||| | | | Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1683 TCTTTATACGACGATGTAGGTCCTGGATTGCATAGGAAGATTGTTGGGATCCCACCTTTA 1742 |||||||| ||| |||||||| || | ||||||| ||||| ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1743 ATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAAC 1802 ||| ||| |||||||| ||||| || |||||||| | | ||| | |||| || || Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1803 TCTTTAAAATGC-------TTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCA 1855 ||||| ||||| || || |||||| || || ||||| ||||| || || Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-TACATCATCTATGACATTATATGT 679217 Query 1856 GGCATCATT 1864 |||||||| Sbjct 679216 TGCATCATT 679208 Score = 80.6 bits (88), Expect = 5e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1311 TTTCCTCAGGTTGTGGTTGAACTGTATTTGTACTGTTATGATATCGTGGTTTTTCAAGAA 1370 |||||| | ||||| |||||||||||| || | |||||| | |||| | || ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1371 CGGCATCTTGTCGTGTTGGGATATCTTGAAATAAAGGGGATTTGTTATCGT-CCAGGTAT 1429 ||| || | | |||||| | ||||||| |||| ||| ||| | | | | ||| |||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAGGGGGAATT--TAAACTTCCCAAGTAT 693658 Query 1430 ATACGCCATTCTCTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGAGAATCCAT 1484 |||||||||| | | || || ||| ||| | | ||| || ||| ||||||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8706883787148