Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005319.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq1694 98.7 2e-17 seq1129 86.0 1e-13 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 253/361 (70%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 2237 CCTCTTGCAGATCTGCCATCGATCTGAAACTCTCCCCAGTCGATGGTGTCTCCGTCCTTC 2296 || || |||||||| ||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2297 TCCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2356 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2357 GCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTATTTCCC 2415 | ||| | ||| |||| | ||| || |||| | ||| ||||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2416 TTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGAAGTTCCCTGCAGAC 2475 | ||| ||||| || || || | ||| |||||||| || ||| ||||| |||| || Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2476 TCTTATGTATTTTTTGTTTACTGGGGTTTGTAAG--TTTTCTAATTGTGAGAGGGCTTCT 2533 ||||||| ||||| ||| | |||| | || |||| || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTG-TAGGGTAGTTGAGGCTTTTGAGATGATGA-AGAGCATCA 1743438 Query 2534 TCTTTAGTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAGTTTTTTGC-ATTTAATCTAA 2591 ||||| || || || ||| |||||| |||||||||||| | ||||||| ||||| ||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAAT-GATTTTTGCTATTTATTCTAA 1743496 Query 2592 A 2592 | Sbjct 1743497 A 1743497 >seq1694 Length=789422 Score = 98.7 bits (108), Expect = 2e-17 Identities = 237/355 (67%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 2240 CTTGCAGATCTGCCATCGATCTGAAACTCTCCCCAGTCGATGGTGTCTCCGTCCTTCTCC 2299 || |||||||| |||||||| ||||| || ||||| || | | |||||| ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2300 AGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2359 | || || || || | ||| |||||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2360 GACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTATTTCCCTTCG 2419 | ||| | ||| | | |||||| || || | || || || | |||| ||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2420 AACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGAAGTTCCCTGCAGACTCTT 2479 || | || || ||||| | ||| |||||||| || || | ||| | ||| |||||| Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2480 ATGTATTTTTTGTTTACTGGG--GTTTGTAAGTTTTCTAATTGTGAGAGGGCTTCTTCTT 2537 ||| |||| |||| | | ||| | |||| ||| ||| || | || |||| Sbjct 599018 ATGAATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAAATGATGA-AGAACATCATCTT 598960 Query 2538 TAGTTAGAGAGCATTTGGGATAAGTGAGGAAATAGTTTTTTGCATTTAATCTAAA 2592 | ||||||||| | || ||||| ||||||||||| ||||| |||||| Sbjct 598959 TTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTATTTATTCTAAA 598905 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 2380 GTCGAAGAATCTGTTATTTGTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAG 2439 |||||| || || | ||| ||||| | |||||||| |||||||| || ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2440 ATGAGGTTCCCCA-----TTTTCGTGAAGTTCCCTGCAGACTCTTATGTATTTTTTGTTT 2494 ||| |||||||| || | | | |||| |||| | ||||||| | ||| ||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2495 ACTGGGGT--TTGTAAGTTTTCTAATTGTGAGAGGGCTTCTTCTTTAGTTAGAGAGCAT- 2551 | |||| ||| | ||||| || ||| || || || ||||| | ||||| ||| Sbjct 678508 G-TAGGGTAGTTG-AGGTTTTGAGATGATGA-AGAGCATCATCTTTTGAGAGAGAACATC 678452 Query 2552 TTGGGATAAGTGAGGAAATAGTTTTTTGCATTTAATCTAAA 2592 ||| || || |||||||||||||||| ||||| |||||| Sbjct 678451 TTGAGA-AACTGAGGAAATAGTTTTTGCTATTTATTCTAAA 678412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678084833056