Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005320.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 327/505 (65%), Gaps = 10/505 (2%) Strand=Plus/Plus Query 2084 AAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAACATAA-TCTTTAGGAGC 2142 ||||| | | | ||||| ||| ||||||||| |||||| | || ||||| || | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2143 TTTCTCCTTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2202 ||||| |||| ||| | | | ||| || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2203 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCC 2262 | | || | ||| || ||| ||||| ||||||||||| || || ||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2263 ATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGACTTGACAT---CTGTTGAGCTTTT 2319 ||| | |||||| || || || ||||| || || |||| ||||| ||| Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTT 1743233 Query 2320 AGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGATCGAAGA 2378 || |||| || ||||||| || | ||| | ||| ||| | | || || | Sbjct 1743234 AGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAA 1743292 Query 2379 ATCTTTGATTTTTACACTGGAATTTTCCTTCGAATTGGATGAGCACATGCAGGTGAGGAG 2438 ||| |||||| | || |||||| ||| ||| ||||| || ||||||| || || Sbjct 1743293 ATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTT 1743352 Query 2439 ACCCATCTTCGTGTAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGTTTCTA 2498 ||| | ||||| |||| |||| | | || ||| | |||| ||| | | Sbjct 1743353 CCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGA 1743412 Query 2499 GGGTTTTAATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGTGAGGA 2558 || |||| | || ||| || || ||||| ||||| || || ||| | ||||||| Sbjct 1743413 GGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGA 1743472 Query 2559 AATAATTTTTGGCATTAATTCTGAA 2583 ||| ||||||| ||| ||||| || Sbjct 1743473 AATGATTTTTGCTATTTATTCTAAA 1743497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652485762752