Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005321.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq3069 140 6e-30 seq2957 111 3e-21 seq1694 109 1e-20 seq519 105 1e-19 seq1129 78.8 2e-11 >seq3069 Length=10854949 Score = 140 bits (154), Expect = 6e-30 Identities = 263/385 (68%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 1146 ATTACATTGTTAATACTAATTACACCCATATTATCTAAATATTTCATACATTGAACCCTA 1205 || ||||| || | |||||| || || ||| ||||||||||| || |||| | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAACATGAAAAGCA 3754323 Query 1206 AATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGA 1265 | | | | ||| | ||||| |||| ||| |||||||||| ||| | | Sbjct 3754324 AGTCGTTCTCTGAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATC 3754383 Query 1266 AAACACTGGTGTATTCCCAATGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTT 1325 | || || | | ||| |||||||| |||||| |||||||||||| |||||| | Sbjct 3754384 CATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT 3754443 Query 1326 ATGATGYCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGG 1385 |||||| |||||| | |||| ||||||||| ||||| |||| ||||||||||||| Sbjct 3754444 ATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGG 3754503 Query 1386 GGATTTTTGATCGTC-CAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTC 1444 ||| ||| | | || || |||| ||| || | | ||| | || | |||||| || Sbjct 3754504 GGA-TTTGGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTT 3754562 Query 1445 CCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCACCCGCACG 1504 ||| |||||||||| ||| || |||| ||| | |||||||| ||| || || Sbjct 3754563 CCCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATT 3754622 Query 1505 TTAGATCAACTCTCCGTCTCCGAAT 1529 || || ||| | | ||||| ||| Sbjct 3754623 ATATATAAACACGCTTTCTCCTAAT 3754647 >seq2957 Length=4215098 Score = 111 bits (122), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1284 AATGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGYCGTGGTTGGTG 1343 || |||||| | ||||||| |||||| ||||| ||||| ||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1344 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCC-A 1402 ||||||| |||| ||||| |||||||||||||| || || ||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGA-TTTGGTACTTCCTA 1238867 Query 1403 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1462 |||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1463 GATTTGCACAATCTATGCCGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1512 || | | | ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 109 bits (120), Expect = 1e-20 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1299 TTGTGGTTGAATTGTATTTGGATCGTTATGATGYCGTGGTTGGTGTTGAATGGTCTCTCG 1358 |||| |||||| |||||||||||| ||| ||| |||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1359 TGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTC 1418 | ||| |||||||||||||| || ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1419 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1462 | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 96.9 bits (106), Expect = 6e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1287 GCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGYCGTGGTTGGTGTTG 1346 |||||||| | || || |||||| | ||| | |||| ||||||| || ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1347 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTT 1391 ||||||||| ||||| |||||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 128/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1289 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGYCGTGGTTGGTGTTGAA 1348 |||||| || |||| |||||| ||||| ||||| ||||||| |||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1349 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATA 1408 | ||||| |||| |||||||||||||| |||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1409 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1462 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 93.3 bits (102), Expect = 7e-16 Identities = 244/363 (67%), Gaps = 16/363 (4%) Strand=Plus/Plus Query 2221 ACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCATGATCAAGCACGTCTCCGTC 2280 || ||| ||||| ||||||||||| ||||| ||| | | ||| | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2281 TTTTTCCATGTATGCTTTAACATCTGTTGAGGT---TTTAGCTCCCTGAATGTTCGGATG 2337 ||||| ||||||| |||||||| | ||||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACAT---TAGAGGTTGATTTAGAAAATTGAACATTTTGATG 1743254 Query 2338 GAAATGTGCTGACCTGCTTGGGGAGGT-GAGATCGAAGAATCTGTTGTTTTG-GCACTTG 2395 ||| || | ||| || ||| | | | || || |||| ||| || | ||| | Sbjct 1743255 GAATTGAATGGTTCTG-TTAGGGTGATATATGTCAAAAAATC-ATTGATTGGTGCAACAG 1743312 Query 2396 AATTTGCCTCCGAACTGTATGAGGACATGCAGGTGAGGAGACCCATCTCCGTGTAGTTCC 2455 ||||| ||| ||| || || || ||||||| || || ||| | | ||||||||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2456 CTGCAAATACGTATGAATAATTTATTAGTCGGGGTTGATAAGGC---TGAGATTTGGGAA 2512 |||| | | ||||||| | ||| || |||| | | |||| ||||| || | Sbjct 1743373 TTGCACACTCTTATGAATTTTAGATTTGT-AGGGTAGTTGAGGCTTTTGAGA--TGATGA 1743429 Query 2513 AATGCCTCTTCTTTAGTAAGGGAGCAGTGTGGATAAGTGAGGGAATAATTCTTGGCATTT 2572 | || || ||||| || ||||| || ||| |||||||| ||| ||| ||| |||| Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2573 ATT 2575 ||| Sbjct 1743490 ATT 1743492 >seq1129 Length=1508174 Score = 78.8 bits (86), Expect = 2e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1289 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGYCGTGGTTGGTGTTGAA 1348 |||| | | ||||| |||||| |||||||||||| ||||||| |||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1349 TGGTCTC 1355 ||||||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996