Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005330.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq1129 134 2e-28 seq519 120 5e-24 seq1694 95.1 2e-16 >seq1129 Length=1508174 Score = 134 bits (148), Expect = 2e-28 Identities = 249/358 (70%), Gaps = 18/358 (5%) Strand=Plus/Minus Query 1582 CATTTTCCTCTTTGTCTAGGAAGTCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAGCA 1641 ||||||||||||| |||||||| ||||||||||| || || || || ||||| || | | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1642 CGATTGAAGGGACCCCACCTTCAATCA-AACGAGGCTTTCCGTACTTGCAGTTTGTCTGC 1700 |||||| |||| ||||| ||| | |||| || || || |||||||| || | ||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACG-GGTTTCCCATACTTGCAATTACTTTGC 679299 Query 1701 CATTTTTGTTGGGCCCCTACTAGCTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGAGCG 1760 || | || || | |||| | | |||||| | || |||| ||||| |||| |||| Sbjct 679298 CAATCTT-TTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTT 679240 Query 1761 ACGTCATCAATGACGTTATACTCCACTTG-ATCA-----GAATATACCTTTGAGTTGAAA 1814 || ||||| ||||| ||||| ||| |||| ||||| ||| ||||||| Sbjct 679239 ACATCATCTATGACATTATA----TGTTGCATCATTGTGGAATACTGATTT--GTTGAAA 679186 Query 1815 TCCA---GATGGCCACTGAAGTAATTATGTGGGCCTAATGCTCTAGCCCACATCGTCTTG 1871 || | ||||||| | | ||||||||| || | | || | ||| | | || ||| Sbjct 679185 TCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTG 679126 Query 1872 CCAGTTCGAGAACCACCTTCAACAATTAAACTTATAGGCCTCAATGGCCGCGCAGCGG 1929 || ||||| ||||||| |||| |||| |||| || ||||| |||| ||| Sbjct 679125 CCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 120 bits (132), Expect = 5e-24 Identities = 174/242 (72%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1545 AATTTAGCATTGTGGAGTGTCCAAGCACGGAGCTGTGCATTTTCCTCTTTGTCTAGGAAG 1604 |||| |||||| || || ||||| ||| | |||||||||| || |||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1605 TCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCA 1664 ||||||||| | || ||||| | ||| ||| | |||||||| |||| ||||||| | Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1665 ATC-AAACGAGGCTTTCCGTA-CTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTA 1722 || ||||||| |||||| | |||||| || | ||||| | || ||| |||| | | Sbjct 1742372 ATTTAAACGAG--TTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1723 GCTCTTTCCAGTGTTTC----AACTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTA 1778 |||||||| || | | | ||||| ||| ||||| || ||||||||||| ||| Sbjct 1742430 ATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTA 1742489 Query 1779 TA 1780 || Sbjct 1742490 TA 1742491 >seq1694 Length=789422 Score = 95.1 bits (104), Expect = 2e-16 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1545 AATTTAGCATTGTGGAGTGTCCAAGCACGGAGCTGTGCATTTTCCTCTTTGTCTAGGAAG 1604 |||| ||||| ||||| |||||| ||| |||||||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1605 TCTTTATAGCAGGCCCCCTCTCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCA 1664 ||||||||| | || || || || ||||| || | |||||||| | || ||| || | Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1665 ATCAAACGAGGCTTTCCGTACTTGCAGTTTGTCTGCCATTTTTGTTGGGCCCCTACTAGC 1724 || | | | || || |||||||| | | ||||| | || ||| |||| | | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1725 TCTTTCCAGTGTTTCAACTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTAT 1779 |||||| | || |||| ||||| |||| ||||| | ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8450893084108