Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005347.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq519 168 1e-38 seq1694 111 3e-21 seq1129 105 1e-19 seq3069 80.6 5e-12 >seq519 Length=3254320 Score = 168 bits (186), Expect = 1e-38 Identities = 270/380 (71%), Gaps = 11/380 (3%) Strand=Plus/Plus Query 2238 TCCCCTAGCACTTCTGCCGTCGACCTGGAATACCCCCCATTCAAGGGTGTCTCCGTCCTT 2297 |||||||||| ||| || || | || || | | || || | | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2298 GTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2357 |||||||| || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2358 TGTTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCC 2416 | | ||| | ||| |||| | ||| || |||| | ||| ||||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2417 CCTCGAACTGCATAAGCACGTGGAGATGAGGTTCCCCATTTGTGTGCAACTCTCTGCAGA 2476 | ||| || ||||| || || | ||| |||||||| || |||| | ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2477 CTTTGATGAATTTTTTATTTGTTGGG--GTTGACAGATTTAGAAGTTGCTCTAACGCTTC 2534 || | ||||||||| |||||| ||| ||||| | ||| || | || | | || || Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTTGAG-GCTTTTGA-GATGATGAAGAGCATC 1743437 Query 2535 TTCTTTAGTGAGGGAGCATTTTGGGAAAGTGAGGAAATAATTTTTGGAATTTATTTTAAA 2594 ||||| |||||||| ||| |||||||||||||||||| ||||||| ||||||| |||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Query 2595 ACGCTTTGGAGGAGCCATTT 2614 | ||| |||||||||| Sbjct 1743498 ---CCTTG--GGAGCCATTT 1743512 Score = 118 bits (130), Expect = 2e-23 Identities = 262/382 (69%), Gaps = 11/382 (3%) Strand=Plus/Plus Query 2238 TCCCCTAGCACTTCTGCCGTCGACCTGGAATACCCCCCATTCAAGGGTGTCTCCGTCCTT 2297 ||||||| || ||| || || | || || | |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2298 GTCGATGTAGGACTTGACG--TCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAA 2355 || ||||| || || || || || |||||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2356 TGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTC 2415 || | | || || ||| | | |||||| || | | ||| ||||| | ||||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2416 CCCTCGAACTGCATAAGCACGTGGAGATGAGGTTCCCCATTTGTGTGCAACTCTCTGCAG 2475 || ||||| | | || || | ||| ||||||| || |||| | |||||||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCG-TTGCTGTGTAGTTCTCTGCAC 1749192 Query 2476 ACTTTGATGAATTTTTTATTTGTTGGG--GTTGACAGATTTAGAAGTTGCTCTAACGCTT 2533 ||||| |||||||| |||||| ||| ||||| | ||| || | || | | | Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAG-GTTTTTGA-GATGACGAAGAACAT 1749250 Query 2534 CTTCTTTAGTGAGGGAGCATTTTGGGAAAGTGAGGAAATAATTTTTGGAATTTATTTTAA 2593 | ||||| ||||| | ||| ||||||||||||| |||||||||||| ||||||| ||| Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAA 1749310 Query 2594 A-ACGCTTTGGAGGAGCCATTT 2614 | | | | | | |||||||||| Sbjct 1749311 ACATGTTATTG-GGAGCCATTT 1749331 Score = 82.4 bits (90), Expect = 1e-12 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 1305 TCCTGAGGTTGTGATTGAATCGTATTTGGAGTGTGAGGATGTCTTGGTTCATGTTGAATG 1364 ||||||| |||| ||||| |||| |||| | | |||||| ||||| |||| ||| Sbjct 1741878 TCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATT 1741937 Query 1365 GCCTGATGTCGTGGTTTGTTATCGTGAAATAGAGGGGATTGTTTATCTCCCATATAAAAA 1424 | || | | || ||||||| |||||||||||| ||| || ||||| | | | Sbjct 1741938 GTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATA 1741997 Query 1425 CGCCATTCTTTGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTGAATCCATGGTTGATG 1484 | ||||| |||| || ||||| |||||||| ||| | ||||||| ||| | Sbjct 1741998 CACCATT-GTTGCACTGAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTA 1742056 Query 1485 CAGTCGATGTGGAGGTAGTATGAACAGCCGCAGTCGAGGTCTATTCGCTT 1534 |||| ||||| |||| ||| || || |||| | || || ||||| Sbjct 1742057 CAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 2382 GTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCCTCGAACTGCATAAGCACGTGGAG 2441 |||||| || | | ||| ||||| | | ||||||| |||||| | ||| ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2442 ATGAGGTTCCCCATTTGTGTGCAACTCTCTGCAGACTTTGATGAATTTTTTATTTGTTGG 2501 ||| |||||||| | |||||| |||||||| || | |||||||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2502 G--GTTGACAGATTTAGAAGTTGCTCTAACGCTTCTTCTTTAGTGAGGGAGCATTTTGGG 2559 ||||| | ||| || | || | | | || ||||| | ||| || ||| ||||| Sbjct 588129 ATAGTTGAG-GTTTTTGA-GATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGG 588072 Query 2560 AAAGTGAGGAAATAATTTTTGGAATTTATTTTAAAACGCTTTGGAGGAGCCATTT 2614 |||||||||||||| |||| | ||||||| |||| | || |||||||||| Sbjct 588071 AAAGTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTT---CGGAGCCATTT 588020 >seq1129 Length=1508174 Score = 105 bits (116), Expect = 1e-19 Identities = 274/404 (68%), Gaps = 18/404 (4%) Strand=Plus/Minus Query 2287 TCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTC 2346 ||||| ||||| || ||||| || || || || ||| | ||||||| |||| || Sbjct 695205 TCTCCCTCCTTTTCAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTT 695146 Query 2347 GGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAC 2406 | |||||| | | | || | ||| | | |||||| || || | ||| || | Sbjct 695145 GTATGGAATTAGATAGTTTTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGGAA 695086 Query 2407 TGGTATTTCCCCTCGAACTGCATAAGCACGTGGAGATGAGGTTCCCCATTTGTGTGCAAC 2466 | |||||| |||||| | ||| | ||| || |||||||| || |||| | Sbjct 695085 CAGAATTTCCTTGTGAACTGGAGAAGTATGTGCGAATATGGTTCCCCGTTGCTGTGTAGT 695026 Query 2467 TCTCTGCAGACTTTGATGAATTTTTTATTTGTTGGG--GTTGACAGATTTAGAAGTTGCT 2524 | ||| || ||| ||||||||| ||||||| ||| ||||| ||||| || | || | Sbjct 695025 TTTCTACA--CTT--ATGAATTTTATATTTGTAGGGTAGTTGAG-GATTTTGA-GATGAT 694972 Query 2525 CTAACGCTTCTTCTTTAGTGAGGGAGCATTTTGGGAAAGTGAGGAAATAATTTTTGGAAT 2584 | | || ||| | | ||| || ||| | ||||||||||||||||| |||||| || Sbjct 694971 GAAGACCATCATCTATTGAGAGAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTAT 694912 Query 2585 TTATTTTAAAACGCTTTGGAGGAGCCATTTGGTC-AATGTACCCCAATTGACCGCTCTTG 2643 ||||| || | | ||| ||| ||||||| || |||||| || | | | |||| Sbjct 694911 TTATTCTATACCTGTTT--AGG-GCCATTTTTTCAAATGTAACCGATTGAAAAGCTC--- 694858 Query 2644 GCATTTGGTGC-CTA-CAATCGGTGTAATGGGGTACAATATATA 2685 | | |||| ||| ||||||||| ||| || |||||||||| Sbjct 694857 ACTTAAAGTGCACTACCAATCGGTG-AATTGGAGACAATATATA 694815 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 1305 TCCTGAGGTTGTGATTGAATCGTATTTGGAGTGTGAGGATGTCTTGGTTCATGTTGAATG 1364 ||||||||||| |||||| |||| |||| | |||||| |||| |||| |||| Sbjct 3754409 TCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATG 3754468 Query 1365 GCCTGATGTCGTGGTTTGTTATCGTGAAATAGAGGGGATTGTTTATCTCCCATATAAAAA 1424 | || | | ||| ||||| | ||||||| |||||||| || || || ||| | | Sbjct 3754469 GTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATA 3754528 Query 1425 CGCCATTCTTTGCTTGAAG-AGCAGTGATGTGTTCCCCTGTGCGTGAATCCATGGTTGAT 1483 || |||| |||| ||| | ||||| | || ||| ||||| ||| ||| ||| | Sbjct 3754529 CGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTT 3754587 Query 1484 GCAGTCGATGTGGAGGTAGTATG 1506 ||| | |||| ||||||||| Sbjct 3754588 GCAATTAATGTCTTGGTAGTATG 3754610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8802870897870