Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005348.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq519 141 2e-30 seq3069 105 1e-19 seq1694 87.8 3e-14 seq1129 78.8 2e-11 >seq519 Length=3254320 Score = 141 bits (156), Expect = 2e-30 Identities = 342/506 (68%), Gaps = 10/506 (2%) Strand=Plus/Plus Query 2093 GAAGATTCTATCTAAATTGGATTTTAAATTATGATATTGAAATATATAATCTTTTGGGAG 2152 ||| |||| | | |||||||| || |||||||||||||| | | || |||||| Sbjct 1742997 GAAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTC 1743056 Query 2153 TTTTTCTTTAATTATAGCTAAAGCAGCTTCAGTTGAACCTGCATTTAAT-GCCTCGGCGG 2211 || ||||| ||||| ||| | | || |||| ||| | ||||| || | | | Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGA-CCTAGAATTAATCGCTTTAGTGT 1743115 Query 2212 CTGCGTCGTTAGCTGTTTGGCAGCCTCCTCTAGCAGATCTGCCGTCAATTTGGAATTCTC 2271 | | || | || |||| | ||| ||||||||||| || |||||||| || || Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2272 CCCATTCGAGAGTGTCTCCGTCCTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAG 2331 | || || | |||||| ||||| ||||| || || || || | ||| | ||||||| Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAG 1743235 Query 2332 CTCCCTGTACATTCGGATGGAAATGTGCTGACCGGGTTGGG-GATACCAGGTCGAAGAAT 2390 || ||||| ||||||| || | | | | ||| |||| | ||| || ||| Sbjct 1743236 AAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAAT 1743294 Query 2391 CGTTGATTTGTGCAGTTGTATTTACCCTCGAATTGGATAAGCACGTGGAGATGATGTTCC 2450 | |||||| ||||| | ||||||| ||| |||||||| || || | ||| ||||| Sbjct 1743295 CATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCC 1743354 Query 2451 CCATCTTCGTGGAGTTCTCTACAGATTTTAATGAATTTTTTATTTGT--GGGAGTCTGTA 2508 || | ||| |||||| | || | | | ||||||||| |||||| || ||| || | Sbjct 1743355 CCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGT-TG-A 1743412 Query 2509 GGTTCTGTAATTGAGAAAGTGCCTCTTTTTTAGTAAGAGAGCAT-TGGGGATAAGTGAGG 2567 || | | | ||| ||| || || | ||| || || || ||| | |||| |||||||| Sbjct 1743413 GGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGG 1743471 Query 2568 AAGTAATTCTTGGCTTTAATACTAAA 2593 || | ||| ||| || || ||||| Sbjct 1743472 AAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 122 bits (134), Expect = 2e-24 Identities = 341/509 (67%), Gaps = 17/509 (3%) Strand=Plus/Plus Query 2093 GAAGATTCTATCTAAATTGGATTTTAAATTATGATATTGAAATATATAATCTTTTGGGAG 2152 ||| |||| | | ||||| || || |||||||||||||| | || || |||||| Sbjct 1748812 GAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTC 1748871 Query 2153 TTTTTCTTTAATTATAGCTAAAGCAGCTTCAGTTGAACCTGCAT--TTAAT-GCCTCGGC 2209 ||| ||||| ||||| ||| || || || ||| ||||| ||||| || || || Sbjct 1748872 TTTCTCTTTTATTATTTGTAATGCTGCATCTCTTG---GTGCATAATTAATCGCTTCAGC 1748928 Query 2210 GGCTGCGTCGTTAGCTGTTTGGCAGCCTCCTCTAGCAGATCTGCCGTCAATTTGGAATTC 2269 | | | || | || ||| | ||| ||| ||||||| || |||||||| || || Sbjct 1748929 GTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATC 1748988 Query 2270 TCCCCATTCGAGAGTGTCTCCGTCCTTATCGATATAGGACTTGA--CGTCGGAGCTGGAT 2327 |||| || | | |||||| ||||| || || || || || | | || || | ||| Sbjct 1748989 ATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGAT 1749048 Query 2328 TTAGCTCCCTGTACATTCGGATGGAAATGTGCTGACCGGGTTGGGGATACCAGGTCGAAG 2387 ||||| || ||||| |||||||| || || || ||| | | |||||| Sbjct 1749049 TTAGCATATTGAACATTTGGATGGAATTG-AATGGTTCTATTAGGGTTTGTATGTCGAAA 1749107 Query 2388 AATCGTTGATTTGTGCAGTTGTATTTACCCTCGAATTGGATAAGCACGTGGAGATGATGT 2447 || | |||||| |||||| | |||| || ||| | || | || || | ||| || Sbjct 1749108 AACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT 1749166 Query 2448 TCCCCATCTTCGTGGAGTTCTCTACAGATTTTAATGAATTTTTTATTTGT--GGGAGTCT 2505 |||| | | ||| |||||||| || | ||| |||||||| |||||| || ||| | Sbjct 1749167 TCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGT-T 1749224 Query 2506 GTAGGTTCTGTAATTGAGAAAGTGCCTCTTTTTTAGTAAGAGAGCAT-TGGGGATAAGTG 2564 | ||||| | | ||| ||| | || | ||| || || | ||| | |||| ||||| Sbjct 1749225 G-AGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTG 1749282 Query 2565 AGGAAGTAATTCTTGGCTTTAATACTAAA 2593 || || ||||| ||| || || ||||| Sbjct 1749283 AGAAAATAATTTTTGCTATTTATTCTAAA 1749311 Score = 93.3 bits (102), Expect = 7e-16 Identities = 156/221 (71%), Gaps = 11/221 (5%) Strand=Plus/Plus Query 1302 TTTCCTGAGGTTGTGGTTGAACCTGATTTGGTCTGATATCATGTCGTGGTTCCTGTTGAA 1361 ||||||||| |||| |||||| || ||| | ||| ||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1362 TGGTCGGCTGATGTGTTTTATTATCTTGAAATATAGGGGATTGTTGAGCTCCCA--GATA 1419 | ||| || || | | ||||||||||||| |||| ||| | ||||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1420 AACACGCCACT-CTGAGCTTGAAGAGC--AGTGATGTGTTCCCCTGTGCGTAAATCCATG 1476 ||| ||| | || || |||| ||||| |||||||| ||| | |||||||| Sbjct 1741996 TACA--CCATTGTTGCACT----GAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATC 1742049 Query 1477 GTTGGTGCAGTTAATGTGTAGATAGTATGAGCACCCGCAGT 1517 ||| | |||||||||||| | || ||| ||| || |||| Sbjct 1742050 GTTCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGT 1742090 >seq3069 Length=10854949 Score = 105 bits (116), Expect = 1e-19 Identities = 202/292 (69%), Gaps = 12/292 (4%) Strand=Plus/Plus Query 1230 GAAATGACCAGTCTGAGGCCGTAAGGTCGTCCAGATCTGGAAGTTCAGATAACA----CT 1285 ||| ||| |||| ||| ||| ||||||||||||| ||| | ||| | || Sbjct 3754335 GAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTTGAA----AAATATCCATGCCT 3754390 Query 1286 TGTGAATCCCCAACTCTTTCCTGAGGTTGTGGTTGAACCTGATTTGG-TCTGATATCATG 1344 | |||| ||| |||||||||||||| |||||| || ||| ||| ||| ||| Sbjct 3754391 TCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCT-CTATGATG 3754449 Query 1345 TCGTGGTTCCTGTTGAATGGTCGGCTGATGTGTTTTATTATCTTGAAATATAGGGGATTG 1404 ||||||| |||| ||||||| || |||| | ||| |||||||||||||||||| Sbjct 3754450 TCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTT 3754509 Query 1405 TTGAGCTCCCAGATAAACACGCCACTCTGAGCTTGAAG-AGCAGTGATGTGTTCCCCTGT 1463 | || || ||| | ||| || | | || ||| | ||||| | || ||| || Sbjct 3754510 GGTACTTCTCAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGT 3754568 Query 1464 GCGTAAATCCATGGTTGGTGCAGTTAATGTGTAGATAGTATGAGCACCCGCA 1515 ||| |||| ||| ||| |||| ||||||| | | ||||||| ||| || || Sbjct 3754569 GCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 1312 TTGTGGTTGAACCTGATTTGG-TCTGATATCATGTCGTGGTTCCTGTTGAATGGTCGGCT 1370 |||| ||||||| |||||| ||| ||| ||||||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTC-TATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1371 GATGTGTTTTATTATCTTGAAATATAGGGGATTGTTGAGCTCCCAGATAAACACGCCACT 1430 |||| | ||||||||||||| || |||| | ||||| | | |||||| | Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1431 CTGAGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTAAATCCATGGTTGGTGCAGTTAA 1490 | || |||||| |||||||| |||| |||||||| ||| |||| |||| Sbjct 596522 GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1491 TGTGTAGATAGTATGAGCACCCGCA 1515 | ||| | || |||| ||| || || Sbjct 596462 TATGTTGGTAATATGTGCAACCACA 596438 >seq1129 Length=1508174 Score = 78.8 bits (86), Expect = 2e-11 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1302 TTTCCTGAGGTTGTGGTTGAACCTGATTTGG-TCTGATATCATGTCGTGGTTCCTGTTGA 1360 |||||| | ||||| ||||||| || ||| ||| ||| |||| |||| | |||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTC-TATGATGTTGTGGATGTTGTTGA 693717 Query 1361 ATGGTCGGCTGATGTGTTTTATTATCTTGAAATATAGGGGATTGTTGAGCTCCCAGATAA 1420 | |||| || ||||| | |||||||| |||| ||| ||| | | ||||| || Sbjct 693716 ACGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAGGGGGAATT-TAAACTTCCCAAGTAT 693658 Query 1421 ACACGCCACTCTGAGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTAAATCCATGGTTG 1480 | |||||| | | | | ||| ||| | ||||| || || |||||||| ||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGAGATATTCCCG-GTACGAAAATCCATCGTTC 693599 Query 1481 GTGCAGTTAATGTGTAGATAGTATGAGCA 1509 || ||||||||||| | || |||| ||| Sbjct 693598 ATGTAGTTAATGTGTTGGTAATATGTGCA 693570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8761272453060