Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005807.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq519 87.8 3e-14 >seq519 Length=3254320 Score = 87.8 bits (96), Expect = 3e-14 Identities = 229/347 (66%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 2255 ACCTCCTCTAGCTGATCTTCCATCGACCTGGAACACTCCAAAATCAACGATGTCTCCGTC 2314 || ||| ||||| ||||||||||| | || || | | |||| ||| |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2315 TTTCTCCATATAGGTCTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTGGGATGGAA 2374 || || || || | || |||| || | ||||| |||| || ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2375 ATGTGCTGACCTGCTTGGG-GATACTAGGTCGAAGAATCGTTGATTTGTGCAGTTGTATT 2433 || | ||| | ||| |||| || ||| || |||| |||||| ||||| | ||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2434 TCCCCTCGAACTGGATGAGGACGTGGAGATGAGGGCTCCCATTTTGATGTAGCTCTCTGC 2493 | || ||| ||||| || || || | ||| || ||| || ||||| ||| ||| Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGC 1743376 Query 2494 AGATCCTTATGAATTTAATGTTAGTTGGTGTGTTTAATTTTTGTAATTGGGTTAGGGCTT 2553 | | ||||||||||| | || || || ||| | ||| | || || || | Sbjct 1743377 ACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2554 CTTCTTTGTCGATGGAGCATTGTGGGTATGTGAGGAAATAATTTTTG 2600 | ||||| || ||| ||| |||| | |||||||||| ||||||| Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTG 1743483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796471137130