Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005812.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq3069 120 5e-24 seq519 78.8 2e-11 seq1694 77.0 6e-11 >seq3069 Length=10854949 Score = 120 bits (132), Expect = 5e-24 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1285 CAACGCCTTCCTGAGGTTGTGGTTGAATTGGATCTGTATCTCCAAATAGTCGTTGTTGTC 1344 ||| || |||||||||||| ||||||||| ||||| ||||| | ||||| || || Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1345 GTTGAATGGTTTGCTGTTGTGCTTCA--GCACCTTGAAATACAGGGGATTTGGAACTTCC 1402 ||| |||||| | || | ||| ||| | ||||||||| ||||||||||| ||||| Sbjct 3754461 GTTAAATGGTCTCCTCTGGTG--TCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1403 CATATATACACGCCATT-CTGCGCTTGAGCTGCAGTAATGGTTTCCCCTGTGCGTAAATC 1461 || ||||| ||| |||| ||| | | ||| | ||| | ||| ||| ||||| |||| Sbjct 3754519 CAAATATATACGTCATTGTTGCAC-TAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1462 CATATTTGTGACAATTAATGTTTACGTAATACGAACAGCCACA 1504 ||| || | |||||||||| | ||| || | || ||||| Sbjct 3754578 CATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 2227 CCTCTAGCAGATCTTCCATCAACCTGGAATTCTCCCCATTCAATTGTA-TCTCCGTCCTT 2285 || ||||||||||||||||||| || || || | || || | ||| ||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGTCTCCCTCCTT 1743200 Query 2286 CTCCAAATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAACATTTGGATGGAAATG 2345 || | || || || || | ||| ||||||||| ||||||||| ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2346 TGCTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTTTGCACTGGAATTTCCC 2405 | |||| | ||| | | ||| || |||| | ||| |||| |||||| || Sbjct 1743261 AATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2406 TTCGAATTGAATGAGCACATGGAGATGAGG 2435 | ||| || || || ||||| | ||| || Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGG 1743350 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 1289 GCCTTCCTGAGGTTGTGGTTGAATTGGATCTGTATCTCCAAATAGTCGTTGTTGTCGTTG 1348 || ||||||| || || |||||| | |||| ||||| | |||| ||||| |||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1349 AATGGTTTGCTGTTGTGCTTCAGC--ACCTTGAAATACAGGGGATTTGGAACTTCCCATA 1406 |||||| | || | ||| ||| | ||||||||| ||||||||||| ||||| || Sbjct 600172 AATGGTCTCCTCTGGTG--TCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAG 600115 Query 1407 TATACACGCCATT 1419 |||| ||| |||| Sbjct 600114 TATATACGTCATT 600102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697284135784