Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005843.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq1129 161 2e-36 seq519 140 5e-30 seq1694 132 8e-28 seq3069 86.0 1e-13 >seq1129 Length=1508174 Score = 161 bits (178), Expect = 2e-36 Identities = 272/390 (70%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 1458 AATTTTGCATTGTGGAGGGTCCAAGCTTTTAGTGCTGCATTTTCCTCTTTTTCAAGGGAA 1517 |||| |||||| ||||| ||| || || || || ||||||||||||| || ||| || Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1518 CATTTATAGCTGGCTCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTA 1577 |||||||| || || || |||||||| || | | ||||||||| | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1578 ATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGC 1637 ||| |||| || ||||| || ||||| || ||||| | ||||| | ||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1638 TCTTTCCAATGTTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTGTACTCC 1697 |||||| |||| ||||||||||| || ||||| || ||||| ||||| || || Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1698 ACATCATTTGAGTAAACCCTAGGATTGAAATCCAAG---TGTCCACTCAAATAATTATGT 1754 ||||||| | | || |||||||| ||| || || | | |||||||| Sbjct 679215 GCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGA 679156 Query 1755 GGTCCTAAAGCACGAGCCCACATCGTCTTTCCTGTCCTCGAAT--CACCCTCGATGATTA 1812 | | | | || ||| | | || || ||| | |||| | || || ||||||| Sbjct 679155 CGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTA 679098 Query 1813 TACTAATAGGTCTCTCCGGCCGCGCAGCGG 1842 |||| ||||||| || |||| |||| ||| Sbjct 679097 TACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 140 bits (154), Expect = 5e-30 Identities = 175/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1458 AATTTTGCATTGTGGAGGGTCCAAGCTTTTAGTGCTGCATTTTCCTCTTTTTCAAGGGAA 1517 |||| ||||| || || ||||| || || ||| |||||||||| || || ||| || Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1518 CATTTATAGCTGGCTCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTA 1577 ||||||| || ||||| | | ||| ||| | ||||||||||| || ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1578 ATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGC 1637 |||| ||| | |||| | ||||| || ||||| || ||||| ||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1638 TCTTTCCAATG----TTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTGTA 1693 ||||||||||| | ||||||||| ||| |||| || ||||||||||| || || Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 109 bits (120), Expect = 9e-21 Identities = 249/363 (69%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 2077 CTGTTTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAATG 2136 || |||||| || ||| |||||||||||||| || || || || || | || | | | | Sbjct 1743128 CTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAAT-CTACG 1743186 Query 2137 TA-TCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATG 2195 || ||||| ||||| |||||||| || || || | ||| ||||||||| |||| Sbjct 1743187 TAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACA 1743246 Query 2196 TTCGGATGGAAATGTGCTGACCTGGTTGGG-GATACCAGGTCGAACTGTCTTTGATTCGT 2254 || ||||||| || | ||| | ||| |||| | ||| || || |||||| || Sbjct 1743247 TTTTGATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGT 1743305 Query 2255 GATTTGGATTTTCCCTTCGAACTGCATAAGCACGTGGAGATGATGTTCCCCATTTTCGTG 2314 | || ||| ||| ||| || ||||| || || | ||| ||||||| || ||| Sbjct 1743306 GCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTG 1743365 Query 2315 CAGTTCTCTGCAGA-TCTTGATGTATTTTTTGTTAG-AAGGAAGTTGTATGGACAGTAGT 2372 |||||| |||| | |||| ||| ||||| || | | || ||||| | | || Sbjct 1743366 TAGTTCTTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGA 1743423 Query 2373 TGATCTAGGGCTTCTTCTTTTGTAAGAGGACATTGGGGGTATGTTAGGAAGATATTTTTT 2432 |||| || || || |||||||| || | |||| ||| | || ||||| || ||||| Sbjct 1743424 TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAA-ATGATTTTT 1743482 Query 2433 GCT 2435 ||| Sbjct 1743483 GCT 1743485 Score = 84.2 bits (92), Expect = 4e-13 Identities = 164/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 1165 TTCCTGAGGTTGTGGTTGAACCTTATTTGGATGTGGTAAATCCTGCTGTTGGTGT-AAAT 1223 |||||||| |||| |||||| ||| ||||| | || | |||| ||| |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1224 TGGGTCCTCTGTTTTGAT--TATCGTGAAATAGAGGGGATTTGGTACCTCCCA--GATAA 1279 || ||||||| ||| | |||| |||||||||||| |||||||| ||||| |||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1280 AAACGGAATTCTCTGC-CTGTTCCACAGTGATGCTCTCCCCGGTGCGTGAATCCATTGTT 1338 | || ||| | ||| ||| || ||||| ||||||||| | ||||||| ||| Sbjct 1741997 ACACC--ATTGT-TGCACTGAGCCT-AGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1339 GGCGCAGTCGATGTGTTGGTAGAATGAGCAGCCACAGTTTAGGTCTATTCTCTT 1392 |||| ||||||||||| || ||| ||||||| || || || | ||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 >seq1694 Length=789422 Score = 132 bits (146), Expect = 8e-28 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 1458 AATTTTGCATTGTGGAGGGTCCAAGCTTTTAGTGCTGCATTTTCCTCTTTTTCAAGGGAA 1517 |||| |||||| ||||| |||||| || || || |||||||||||| || || || Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1518 CATTTATAGCTGGCTCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTA 1577 ||||||| || || || |||||||| || | |||||||||| || ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1578 ATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGC 1637 |||||||| | ||||| || ||||| | ||||| || ||||| ||||||| | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1638 TCTTTCCAATGTTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTGTACTCC 1697 |||||| | || ||||||||||| || |||| | ||||||||| | || | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGT 599633 Query 1698 ACATCATTTGAGTAAACCCTAGGATTGAAATCCAAGTGTCCACTCAAATAATTATG 1753 ||||||| || | || |||||||| |||| || || | |||||||| Sbjct 599632 GCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 91.5 bits (100), Expect = 2e-15 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1458 AATTT-TGCATTGTGGAGGGTCCAAGCTTTTAGTGCTGCATTTTCCTCTTTTTCAAGGGA 1516 ||||| ||||| ||||| | |||| || || || ||||||||||||| || | | | Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1517 ACATTTATAGCTGGCTCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTT 1576 | | | ||| || || || | | ||||||| | ||||||||||| || |||||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1577 AATTTGAACTGGCTTCCCGTATTTGCAGTT 1606 ||||| ||| || ||||| || ||||| || Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Score = 77.0 bits (84), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 2077 CTGTTTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAATG 2136 ||||||||| || || |||||||||||||| ||||| || || || ||||| | | | | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAAT-CTACG 599216 Query 2137 TA-TCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATG 2195 || ||||| ||||| || ||||| || || || | ||| |||||| | ||||| Sbjct 599215 TAGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACA 599156 Query 2196 TTCGGATGGAAATG 2209 | |||||||| || Sbjct 599155 CTTGGATGGAATTG 599142 >seq3069 Length=10854949 Score = 86.0 bits (94), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 1157 TCAACGCCTTCCTGAGGTTGTGGTTGAACCTTATTTGGATGTGGTAAATCCTGCTGTTGG 1216 |||| || |||||||||||| |||||| ||| ||||| | || | || | Sbjct 3754400 TCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGT 3754459 Query 1217 TGTAAATTGGG-TCCTCTGTTTTGAT--TATCGTGAAATAGAGGGGATTTGGTACCTCCC 1273 ||| || ||| ||||||| | | || || | ||||||| |||||||||||||| || | Sbjct 3754460 TGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTC 3754519 Query 1274 AGATAAAAACGGAATTCTCTGC-CTGTTCCACAGTGATGCTCTCCCCGGTGCGTGAATCC 1332 | ||| | ||| ||| | ||| || || ||||| | | ||| ||||| ||| | Sbjct 3754520 AAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATAC 3754578 Query 1333 ATTGTTGGCGCAGTCGATGTGTTGGTAGAATGAGCAGCCACA 1374 |||||| ||| | |||| ||||||| ||| ||| ||||| Sbjct 3754579 ATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8230101102736