Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005844.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq519 123 4e-25 seq3069 107 3e-20 seq1694 98.7 2e-17 seq2957 96.9 6e-17 seq1129 91.5 3e-15 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 240/352 (68%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 2212 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2271 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2272 TCCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2331 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2332 GCTGACCTTGTTGGG-GATACCAAATCGAAGAATCGTTGATTCGTGCATCTGAATTTCCC 2390 | || | ||| |||| | || || |||| |||||| ||||| | |||||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2391 CTCGAATTGGATAAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTACAGAC 2450 ||| |||||||| ||||| | ||| || ||| | |||||||||| | || || Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2451 CTTGATGAACTTCTTGTTAGTTGCGGTGTCTAGGGCTTTTATTTGGTCAAGGGTTTCCTC 2510 | ||||| || || || | | || ||| ||| | || | ||| | || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2511 TTTTGTAAGCGAACAGTGTGGATAAGTTAGGAAATAATTTTTGGCATTTATT 2562 |||||| || ||||| ||| |||| ||||||| ||||||| ||||||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Score = 105 bits (116), Expect = 1e-19 Identities = 336/509 (66%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 2060 GAGGAGCAAATATCCTATCTAAATTAGCATTTAGATTATGAAATTGTAGTACATAA-TCT 2118 |||| || ||||| | | | ||||||| ||| | ||||||| ||||||| | || ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2119 TTAGGTGCTAACTCCTTAATCACTC-TAAGA--GCCTCTGACTTACTGCCTGCGTTAAGT 2175 || ||| || ||| || || | | ||| || ||| ||| ||| | |||| Sbjct 1748865 TTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCT--CTTGGTGCATAA-TTAATC 1748920 Query 2176 GCTGCGGCGTAAGCATCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTCCATCGATC 2235 ||| | ||||| |||| || | | | || || || ||||||||||||| || Sbjct 1748921 GCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATT 1748980 Query 2236 TGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACG--TCCG 2293 ||||| || |||| || | |||||| ||||| || | || || || || || Sbjct 1748981 TGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAA 1749040 Query 2294 AGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACCA 2353 || |||||||||| |||| || |||||||| || | || || ||| | | Sbjct 1749041 AGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTA 1749099 Query 2354 AATCGAAGAATCGTTGATTCGTGCATCTGAATTTCCCCTCGAATTGGATAAGCACATGGA 2413 ||||| || | |||||| ||||| | ||||||||| ||| | || | ||||| | Sbjct 1749100 TGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCA 1749158 Query 2414 GATGAGGGCTCCCATCTTCGTGTAGTTCTCTACAGACCTTGATGAACTTCTTGTTAGTTG 2473 ||| || |||| | |||||||||||| || || || ||||| || || || | Sbjct 1749159 AATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAG 1749217 Query 2474 CGGTGTCTAGGGCTTTTATTTGGTCAAGGGTTTCCTCTTTTGTAAGCGAACAGTGTGGAT 2533 | || ||| ||| | || ||| || |||||||| || |||| ||| Sbjct 1749218 GGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA 1749277 Query 2534 AAGTTAGGAAATAATTTTTGGCATTTATT 2562 |||| || |||||||||||| ||||||| Sbjct 1749278 AAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Score = 96.9 bits (106), Expect = 6e-17 Identities = 160/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 1276 TTTCCTCAGGTTGTGGTTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTGTTGAA 1335 |||||| || |||| |||||| | || || | | ||| ||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1336 GGGTCTGCTGTGGTGATGCATTATCTTGAAATAAAGGGGATTTGGTACCGTCCA--GATA 1393 |||| || |||| | ||||||||||||| |||| |||||||| ||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1394 TACGCGCCATTCTCGGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTT 1453 || | ||||| | | ||||| ||||| ||||||| ||| | ||||||| ||| Sbjct 1741996 TA--CACCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1454 GTGGCAGTTGATGGATATGTAATAGCTGCAGCCGCAATTGAGATCAAT 1501 ||||| ||| | |||||| |||| || || | | |||||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAAT 1742100 >seq3069 Length=10854949 Score = 107 bits (118), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 1270 CAATGCTTTCCTCAGGTTGTGGTTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGT 1329 ||| |||||||| |||||| ||||||| | || || | | ||| |||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1330 GTTGAAGGGTCTGCTGTGGTG--ATGCATTATCTTGAAATAAAGGGGATTTGGTACCGTC 1387 ||| || ||||| || ||||| ||| ||| ||||||||| |||||||||||||| Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATG--TTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1388 CAGATATACGCGCCATTCTCGGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCC 1447 || ||||| || |||| | | | ||| | ||||| || ||| ||||| ||| | Sbjct 3754519 CAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATAC 3754578 Query 1448 ATAGTTGTGGCAGTTGATGGATATGTAATAGCTGCAGCCGCA 1489 || ||| | ||| || ||| | ||| || |||| || || Sbjct 3754579 ATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 98.7 bits (108), Expect = 2e-17 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 1286 TTGTGGTTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTGTTGAAGGGTCTGCTG 1345 |||| |||||| | ||||| | | ||| ||||||||||| ||||||| ||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1346 TGGTGATGCATTATCTTGAAATAAAGGGGATTTGGTACCGTCCAGATATACGCGCCATTC 1405 | ||| | ||||||||||||| || |||||||||| ||| ||| ||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1406 TCGGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTTGTGGCAGTTGAT 1465 | | |||| |||||| ||||||| |||| ||||||| ||| ||| || || Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAAT 596462 Query 1466 GGATATGTAATAGCTGCAGCCGCAATTGAGATCA 1499 | |||||| |||| || |||| | |||| Sbjct 596461 ATGTTGGTAATATGTGCAACCACAATATATATCA 596428 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 1274 GCTTTCCTCAGGTTGTGGTTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTGTTG 1333 |||||||| | || || |||||| || | | | ||| |||||| |||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1334 AAGGGTCTGCTGTGGTG--ATGCATTATCTTGAAATAAAGGGGATTTGGTAC 1383 || ||||| || ||||| ||| ||||||||||||| |||||||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATG--TTATCTTGAAATAGAGGGGATTTGGTAC 600123 >seq2957 Length=4215098 Score = 96.9 bits (106), Expect = 6e-17 Identities = 176/252 (70%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 1271 AATGCTTTCCTCAGGTTGTGGTTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTG 1330 || |||||| | ||||||| |||||| | || || | | ||| |||| | | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1331 TTGAAGGGTCTGCTGTGGTG--ATGCATTATCTTGAAATAAAGGGGATTTGGTACCGTCC 1388 ||||| | ||| || ||||| ||| ||||||||||||| || |||||||||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATG--TTATCTTGAAATAGCGGAGATTTGGTACTTCCT 1238866 Query 1389 AGATATACGCGCCATTCTCGGCTTGAGCTGCAGTGATGGGTTCC-CCTGTGCGTGAATCC 1447 || |||| | |||| | | ||||| ||| ||| || |||| | ||||| ||||| Sbjct 1238867 AGGTATATACTTCATTGTTGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCC 1238925 Query 1448 ATAGTTGTGGCAGTTGATGGATATGTAATA-GCTGCAGCCGCAATTGAGATCAATTCTCC 1506 || ||| |||| ||| | |||||| | |||| || || || |||||| | | | Sbjct 1238926 ATTGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTACGCT 1238985 Query 1507 TCCTGCGAATTG 1518 | || | ||||| Sbjct 1238986 TTCTTCTAATTG 1238997 >seq1129 Length=1508174 Score = 91.5 bits (100), Expect = 3e-15 Identities = 174/250 (70%), Gaps = 11/250 (4%) Strand=Plus/Minus Query 1588 AATTCTGCATTCTTGAGAGTCCAATTCTTTAGTGCAGCATTCTTTTCCTCGTCTATGTAC 1647 ||||||||||| | ||| ||| ||||||| || ||| |||| | || | |||| | | Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1648 TCTTTATAGCTGGAGTTGGGACCAGGATTGCAGAGGAAGATAG-TGGGAATTCCTCCTTT 1706 |||||||||| | ||| ||||| || | ||||| | ||||| | ||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGT-AACCTTT 679336 Query 1707 AATTTGAACTGGCTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1766 |||| |||| || ||||| ||||| || |||||||| | | ||| | |||| || || Sbjct 679335 AATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAA 679277 Query 1767 CTCTTTAAAATG------CTTTAGGT-AGTGGGGGTCGACGTCATCAATCACGTTGTACC 1819 ||||| |||| ||||| || |||||| || || ||||| || || || || Sbjct 679276 ATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-TACATCATCTATGACATTATATG 679218 Query 1820 AAGCATCATT 1829 |||||||| Sbjct 679217 TTGCATCATT 679208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665285297904