Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005850.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq1129 163 5e-37 seq519 140 5e-30 seq1694 132 8e-28 seq3069 91.5 2e-15 >seq1129 Length=1508174 Score = 163 bits (180), Expect = 5e-37 Identities = 248/351 (71%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 1449 CATTCTCCTCTTTATCGAGGAAGTTTTTATAGCTAGTCCCCTCACCTGGATTGCACAGCA 1508 |||| ||||||||||| ||||| | |||||||| | || ||||||||||| |||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1509 CGATTGACGGGATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTGGTTTGCC 1568 |||||| |||| |||||||||| |||| || || || || |||||||| |||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1569 AGTCCCTTTGGGCCCCTATCAATTCTTTCCAATGCTTTAATTTCAAATAATTAGGGCTTA 1628 | | | ||| | |||| ||||| |||||| ||||||| | || || ||| | || ||| Sbjct 679297 AAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1629 TGTCATCAGTGACGTTATATTCCACGTCATTAGAATATACCCTATTATTAAAATCAA--- 1685 ||||| |||| |||||| | ||||| |||| || || ||||| | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGT 679179 Query 1686 GATGGCCACTTAGATAGTTATGTTTACCTAATGACCTGGCCCACATTGTCTTTCCGGTTC 1745 ||||||| | | || ||||| | | ||| | |||| | | || || || ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 1746 GACTATCGCCTTCTATGATGATACTGATCGGTCTTTCTGCCCGCGCAGCGG 1796 |||| |||||| ||||| ||||| | ||||| |||| || |||| ||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 140 bits (154), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 1412 AATTTTGCATTGTGTAGTGACCACGCTCTGAGAGATGCATTCTCCTCTTTATCGAGGAAG 1471 |||| ||||| ||||| ||| |||||| | |||| ||||| ||||| ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1472 TTTTTATAGCTAGTCCCCTCACCTGGATTGCACAGCACGATTGACGGGATTCCACCTTTA 1531 | ||||||| | ||||||| | ||| ||||| |||||||| ||||| ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1532 ATTTGAACTGGCTTTCCG-TATTTGCAATTGGTTTGCCAGTCCCTTTGGGCCCCTATCAA 1590 |||| ||| | |||||| | |||||||| ||||||| || |||| |||| ||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1591 TTCTTTCCAATGCT 1604 |||||||||||||| Sbjct 1742431 TTCTTTCCAATGCT 1742444 Score = 102 bits (112), Expect = 1e-18 Identities = 182/255 (71%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 1058 TAATGTCGTCCAGATTTGGAAATTCAGGTAGGCCTTGTGTAGATTCAACGCCTTCCTCAG 1117 ||||||||||||||| | |||| | || ||||| || | | | | ||||| || Sbjct 1741825 TAATGTCGTCCAGATCTTGAAAAATATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAG 1741884 Query 1118 GTTGTAGTTGAACCGGATTTGGATGGTGTA-GAT-TC-TGGTCGTTGTGTATACTGGGTC 1174 ||||||||||| | || ||||| | || ||| || |||| ||||| || | || || Sbjct 1741885 ATTGTAGTTGAAATGTATCTGGATT-TCTATGATGTCGTGGTTGTTGT-TAAATTGTCTC 1741942 Query 1175 CTCCACTT--GGATTATCTTGAAATAGAGGGGATTTGGAACCTCCCAAATAAAAACGCCA 1232 ||| || | |||||||||||||||||| |||||| | |||||| | | || ||| Sbjct 1741943 CTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCA 1742002 Query 1233 TTCATTGCTTGATGAGC--AGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTTCTGCAG 1290 || |||| ||||| ||||| ||||||| ||| | ||||||| ||| || ||| Sbjct 1742003 TT-GTTGC--ACTGAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAG 1742059 Query 1291 TTGATGTGTACGTAA 1305 || |||||| |||| Sbjct 1742060 TTAATGTGTTGGTAA 1742074 Score = 95.1 bits (104), Expect = 2e-16 Identities = 182/263 (69%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 2035 TTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTGTCCCCGTTGAATTGTA-T 2093 ||||| || ||| |||||||||||||| || || || || | | | | | ||| | Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGT 1743190 Query 2094 CTCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCG 2153 |||| ||||| |||||||| || || |||| ||| | ||||||| |||| || Sbjct 1743191 CTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTT 1743250 Query 2154 GATGGAAATGTGTTGACCTGGTTGGG-GATACCAAGTCGAAGAATCTGTTATTCGTGCAG 2212 ||||||| || | | ||| | ||| |||| | ||| || |||| | ||| ||||| Sbjct 1743251 GATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAA 1743309 Query 2213 TTGTATTTTCCCTCGAATTGGATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGAAGC 2272 | |||| || ||| |||||||| || || | ||| |||||||| || ||| || Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2273 TCTCTGCAGATTTTGATGAACTT 2295 ||| |||| | | | ||||| || Sbjct 1743370 TCTTTGCACACTCTTATGAATTT 1743392 >seq1694 Length=789422 Score = 132 bits (146), Expect = 8e-28 Identities = 254/373 (68%), Gaps = 1/373 (0%) Strand=Plus/Minus Query 1412 AATTTTGCATTGTGTAGTGACCACGCTCTGAGAGATGCATTCTCCTCTTTATCGAGGAAG 1471 |||| |||||| || || | ||| |||| | |||| ||||||| ||| |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1472 TTTTTATAGCTAGTCCCCTCACCTGGATTGCACAGCACGATTGACGGGATTCCACCTTTA 1531 | ||||||| | || ||||||||||| |||| |||||||| | ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1532 ATTTGAACTGGCTTTCCGTATTTGCAATTGGTTTGCCAGTCCCTTTGGGCCCCTATCAAT 1591 |||||||| | || || || ||||||| ||||||| || |||| |||| || ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1592 TCTTTCCAATGCTTTAATTTCAAATAATTAGGGCTTATGTCATCAGTGACGTTATATTCC 1651 |||||| | ||||| | || || ||| | || | |||||| || | |||| | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGT 599633 Query 1652 ACGTCATTAGAATATACCCTATTATTAAAATCAAGATGGCCACTTAGATAGTTATGTTTA 1711 | ||||| | |||| || || |||||| || || |||| || ||||| ||| Sbjct 599632 GCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATGATTA 599573 Query 1712 CCTAATGACCTGGCCCACATTGTCTTTCCGGTTCGACTATCGCCTTCTATGATGATACTG 1771 || | || ||| || | | || || ||||||| |||||| ||||| ||| | Sbjct 599572 CC-GAGGAGTGGGCACAAACAATTTTGCCTATTCGACTTGGGCCTTCAATGATTATAGTT 599514 Query 1772 ATCGGTCTTTCTG 1784 | ||| | |||| Sbjct 599513 TTAGGTTTATCTG 599501 Score = 96.9 bits (106), Expect = 6e-17 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1449 CATTCTCCTCTTTATCGAGGAAGTTTTTATAGCTAGTCCCCTCACCTGGATTGCACAGCA 1508 |||| ||||||||||| | ||| | | | ||| | || |||| | ||||||||| | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1509 CGATTGACGGGATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTGGTTTGCC 1568 ||||||| ||||| ||||||||||||| ||| || || || || |||||||| |||||| Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCC 596120 Query 1569 A 1569 | Sbjct 596119 A 596119 Score = 87.8 bits (96), Expect = 3e-14 Identities = 139/192 (72%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 1119 TTGTAGTTGAACCGGATTTGGATGGTGTAGATTCTGGTCGTTGT-GTATACTGG-GTCCT 1176 |||||||||||| | |||||||| | || | | | || ||||| || | ||| ||||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATC-TCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1177 CCACTT--GGATTATCTTGAAATAGAGGGGATTTGGAACCTCCCAAATAAAAACGCCATT 1234 | | | | |||||||||||||||| ||||||| || |||||| | | |||||||| Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1235 CATTGC-TTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTTCTGCAGTTG 1293 |||| || |||||| ||||||| |||| ||||||| ||| ||||| || Sbjct 596522 -GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTA 596464 Query 1294 ATGTGTACGTAA 1305 || ||| |||| Sbjct 596463 ATATGTTGGTAA 596452 Score = 78.8 bits (86), Expect = 2e-11 Identities = 177/262 (68%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 2035 TTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTGTCCCCGTTGAATTGTA-T 2093 ||||| || || |||||||||||||| ||||| || || | |||| | | ||| | Sbjct 599270 TTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTA-CGTAGT 599212 Query 2094 CTCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCG 2153 |||| ||||| || ||||| || || |||| ||| ||||| | ||||| | | Sbjct 599211 CTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTG 599152 Query 2154 GATGGAAATGTGTTGACCTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAGT 2213 ||||||| || | | ||| | ||| | | |||||| || || | || || || Sbjct 599151 GATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAAC 599093 Query 2214 TGTATTTTCCCTCGAATTGGATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGAAGCT 2273 | ||||||| ||||| || ||| ||||| | ||| |||||||| || || | | Sbjct 599092 AGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATT 599033 Query 2274 CTCTGCAGATTTTGATGAACTT 2295 ||| ||| | | | ||||| || Sbjct 599032 CTCAGCACACTCTTATGAATTT 599011 >seq3069 Length=10854949 Score = 91.5 bits (100), Expect = 2e-15 Identities = 174/246 (71%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 1058 TAATGTCGTCCAGATTTGGAAATTCAGGTAGGCCTTGTGTAGATTCAACGCCTTCCTCAG 1117 ||||||||||||||| | |||| | | ||||| || | ||||| || ||||| || Sbjct 3754356 TAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAG 3754415 Query 1118 GTTGTAGTTGAACCGGATTTGGATGGTGTA-GAT-TC-TGGTCGTTGTGTATACTGGGTC 1174 |||| ||||||| | || ||||| | || ||| || |||||||||| || | | || Sbjct 3754416 GTTGAAGTTGAATTGTATCTGGAT-CTCTATGATGTCGTGGTCGTTGT-TAAATGGTCTC 3754473 Query 1175 CTCCACTTGGA--TTATCTTGAAATAGAGGGGATTTGGAACCTCCCAAATAAAAACGCCA 1232 ||| | | ||| ||||||||| ||||||||||| || || |||||| | ||| || Sbjct 3754474 CTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCA 3754533 Query 1233 TTCATTGC-TTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTTCTGCAGT 1291 || |||| | | | ||||| || ||| ||||| ||| ||| ||| |||| | Sbjct 3754534 TT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAAT 3754592 Query 1292 TGATGT 1297 | |||| Sbjct 3754593 TAATGT 3754598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8082906448488