Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005852.1 Length=2575 Score E Sequences producing significant alignments: (Bits) Value seq1129 149 1e-32 seq1694 136 6e-29 seq519 127 3e-26 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 271/392 (69%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 1446 AATTTTGCATTATGGAGTGTCCACGCTCTGAGAGATGTATTTTCCTCTTTGTCTAGGTAC 1505 |||| |||||| ||||| ||| | |||| | |||||||||||| |||||| | Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1506 CTTTTATAGGAAGACCCCTCCCCTGGATTGCAAAGCACGATAGCGGGAATTCCACCTTTA 1565 ||||||| | | || || |||||||| || | | ||| | || | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1566 ATTTGAACAGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAATCAAT 1625 ||| |||| || || ||||| || || || ||||| ||||| | | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAAA 679276 Query 1626 TCTTTCCAGTGCTTTATTTTTAAATATTGTGGG-TTGACATCATCAATGACGTTATACTC 1684 |||||| | ||||| || ||||| || ||||| | |||||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTA-AGTGGGAGTTACATCATCTATGACATTATATGT 679217 Query 1685 TACATCGTTTGAGTAAACCCTAGAATTGAAATCCATGTGA---CCACTTAGGTAATTATG 1741 | |||| || | | || |||||||| | |||| || | | ||||||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATG 679157 Query 1742 AGAACCTAATGCACGTGCCCACATTGTTTTCCCTGTTCTAGAATCACCTTCAACGATTAA 1801 | | | || || ||| | | ||||| ||| ||| | ||||||| ||||| Sbjct 679156 ACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTAT 679097 Query 1802 ACTTATAGGTCTTTCTGGCCGCGCAGCGGAAT 1833 |||| ||||||| ||||||| |||| ||| || Sbjct 679096 ACTTTTAGGTCTATCTGGCCACGCATCGGTAT 679065 >seq1694 Length=789422 Score = 136 bits (150), Expect = 6e-29 Identities = 258/376 (69%), Gaps = 3/376 (1%) Strand=Plus/Minus Query 1446 AATTTTGCATTATGGAGTGTCCACGCTCTGAGAGATGTATTTTCCTCTTTGTCTAGGTAC 1505 |||| |||||| ||||| ||||| |||| | ||||||||||| || || | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1506 CTTTTATAGGAAGACCCCTCCCCTGGATTGCAAAGCACGATAGCGGGAATTCCACCTTTA 1565 ||||||||| | || || |||||||| || | ||||| | | || ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1566 ATTTGAACAGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAATCAAT 1625 ||||||||| | || ||||| || || | ||||| ||||| || ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1626 TCTTTCCAGTGCTTTATTTTTAAAT-ATTGTGGGTTGACATCATCAATGACGTTATACTC 1684 |||||| | ||||| || ||||| | | || | | || ||||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATGTCATTATCTGG 599634 Query 1685 TACATCGTTTGAGTAAACCCTAGAATTGAAATCCATGTGACCACTTAGGTAATTATGAGA 1744 | |||| || || | || |||||||| |||||| |||| |||||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATGATT 599574 Query 1745 ACCTAATGCACGTGCCCACATTGTTTTCCCTGTTCTAGAATCACCTTCAACGATTAAACT 1804 ||| | | | || || | |||| ||| ||| | ||||||| ||||| | | Sbjct 599573 ACC-GAGGAGTGGGCACAAACAATTTTGCCTATTCGACTTGGGCCTTCAATGATTATAGT 599515 Query 1805 TATAGGTCTTTCTGGC 1820 | ||||| | |||||| Sbjct 599514 TTTAGGTTTATCTGGC 599499 Score = 80.6 bits (88), Expect = 4e-12 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1605 TCTTTCTGGGCCCCAATCAATTCTTTCCAGTGCTTTATTTTTAAATATTGTGGGT--TGA 1662 ||||| || ||||||||| ||||| || ||||| || ||||| || ||||| || Sbjct 589401 TCTTTTTGCGCCCCAATCGATTCTATCTCATGCTTCATCTTTAAGTAA-GTGGGAACTG- 589344 Query 1663 CATCATCAATGACGTTATACTCTACATCGTTTGAGTAAACCCTA-GAATTGAAATCCATG 1721 ||||||||||||| ||||| | |||| ||| | || | || |||||||| | | Sbjct 589343 CATCATCAATGACATTATATGTTGCATC-ATTGTGGAATACTTATTTGTTGAAATCTAAG 589285 Query 1722 TGACCACTTAGGTAATTATGAGAACCTAATGCACGTGCCCA 1762 ||||| || | |||||||||| ||||| || || ||||| Sbjct 589284 TGACCGCTAATGTAATTATGACGACCTAGTGAGCGGGCCCA 589244 >seq519 Length=3254320 Score = 127 bits (140), Expect = 3e-26 Identities = 316/477 (66%), Gaps = 2/477 (0%) Strand=Plus/Plus Query 1959 AAGTTATGATGTTGAAGAAAGAAG-TGTTGCGGTTGTTCTTCCTTTATAATCTGCAACGC 2017 || ||||||| ||| ||| ||| | || ||| |||| | ||||| || || || | Sbjct 1743022 AAATTATGATATTGTAGAGTGAAACTCTTTGGGTCATTCT-CTTTTATTATTTGTAATGT 1743080 Query 2018 TTCTTCAGATGACCTAGCATTTAATGCCTTTGCGTATGTGTCATTAGCAGATTGCTGACC 2077 | || |||||||| ||| | || || | |||| || | | ||||| || Sbjct 1743081 TGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACA 1743140 Query 2078 TCCTCTAGCAGATCTTCCGTCGATCTGGAATTCCCCCCATTGAATTGTGTCTCCGTCCTT 2137 ||| |||||||||||||| || || || || || | || | | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2138 ATCAATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2197 || ||||| || || |||| ||| | ||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2198 TGTTGACCTGGTTGGGGAAACCAGATCGAAGAATCTGTTATTTTTGCACTGGTACTTGCC 2257 | | ||| | ||| | | || || |||| | ||| |||| | | || || Sbjct 1743261 AATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2258 TTCGAACTGGATAAGCACATGCAGATGCGGTTCCCCATCTTCATGCAATTCTTTGCACAC 2317 | ||| |||||||| ||||||| ||| |||||||| | || | |||||||||||| Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2318 TTTAATGAATTTCTTGTTTGTCGGAGTGATTAGGTTTTGTAATTGGGAAAGTGCTTCTTC 2377 | | |||||||| ||||| || | | ||| ||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2378 TTTGGATAGAGAGCACTTGGGGTATGTAAGGAAATAATTCTTGGCATTAATTTTAAA 2434 ||| | || || || | ||| | || ||||||| ||| ||| ||| ||| |||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 120 bits (132), Expect = 5e-24 Identities = 173/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1446 AATTTTGCATTATGGAGTGTCCACGCTCTGAGAGATGTATTTTCCTCTTTGTCTAGGTAC 1505 |||| ||||| || || |||| |||||| | ||||||||| || |||||| | Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1506 CTTTTATAGGAAGACCCCTCCCCTGGATTGCAAAGCACGATAGCGGGAATTCCACCTTTA 1565 ||||||||| | ||||| | | ||| ||| | ||||| | || || ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1566 ATTTGAACAGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTCTGGGCCCCAATCAAT 1625 |||| ||| | || | | | || || || ||||| ||||| || ||||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1626 TCTTTCCAGTG----CTTTATTTTTAAATATTGTGGG-TTGACATCATCAATGACGTTAT 1680 |||||||| || || || ||||| || |||||| |||||||||||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTA-TGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1681 A 1681 | Sbjct 1742491 A 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 157/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1599 TGCCAGTCTTTCTGGGCCCCAATCAATTCTTTCCAGTGCTTTATTTTTAAATATTGTGGG 1658 || || | ||| || || | ||| ||||||||| | ||||| |||||||| || ||| Sbjct 1748475 TGTCAATATTTTTGTGCACTAATTAATTCTTTCAAATGCTTCATTTTTAAGTAAGTGGGG 1748534 Query 1659 TTGACATCATCAATGACGTTATACTCTACATCGTTTGAGTAAACCCTAGAATTGAAATCC 1718 |||||||||||||| ||||| | |||| || | | || |||||||| Sbjct 1748535 GCAACATCATCAATGACATTATATGTTGCATCATTGTGGAATACTGATTTTTTGAAATCT 1748594 Query 1719 ATGTGACCACTTAGGTAATTATGAGAACCTAATGCACGTGCCCA-CATTGTTTTCCCTGT 1777 | ||| | || | |||||||||| || | || | ||||| || ||||| ||| | Sbjct 1748595 AATTGATCCCTAATGTAATTATGACGGCCGAGTGAGGGGGCCCAGCA--GTTTTTCCTAT 1748652 Query 1778 TCTAGAATCACCTTCAACGATTAAACTTATAGGTCTTTCTGGCCGCGCA 1826 || | |||||||| ||||| |||| ||||||| | | | ||||| Sbjct 1748653 TCAACTTGGACCTTCAATGATTATACTTTTAGGTCTATATAGTTGCGCA 1748701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8130904705308