Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_005855.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq519 136 7e-29 seq3069 105 1e-19 seq1694 91.5 3e-15 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 264/381 (69%), Gaps = 13/381 (3%) Strand=Plus/Plus Query 2231 TCCTCTTGCAGATCTTCCATCGATCTGAAACTCACCCCAATCGATGGTGTCTCCGTCTTT 2290 ||| || |||||||||||||| || ||||| ||| | ||||| | | |||||| || || Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2291 ATCGATGTAGGACTTGACATCAGATGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATG 2350 |||||||| || || |||| ||| | ||||||| |||| ||| ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2351 TGTTGATCTACTTGGG-GATGCCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTGC 2409 | | ||| | ||| ||| | ||| || |||| | ||| ||||| | | || | Sbjct 1743261 AATGGTTCTGTTAGGGTGAT-ATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2410 CTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAAA 2469 || ||| || | ||| |||||| ||| |||||||| || ||| || ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2470 TTTTAATGTATAATTTATTTACAGG--AGTTTCGAGGGTTTGTAGTTGGGAAAGTGCTTC 2527 | | ||| || | |||| ||| |||| |||| ||| || || ||| || || Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTT--GAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2528 GGATAAAGAAAGAGAACA-CTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAA 2586 | | || ||||| || |||| |||| ||||||| ||||||| ||||||| ||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAA 1743496 Query 2587 AACGCTTTGGGGGAGCCATTT 2607 | ||| ||||||||||| Sbjct 1743497 A--CCTT---GGGAGCCATTT 1743512 Score = 127 bits (140), Expect = 4e-26 Identities = 371/552 (67%), Gaps = 26/552 (5%) Strand=Plus/Plus Query 2088 AAAATTCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAATATAA-TCTTTCGGTGC 2146 || |||| | | ||||||||||| ||||||||| | |||| ||| || ||||| ||| | Sbjct 1748813 AATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-C 1748871 Query 2147 TAATTCTTTAATGATTC-TAAGA--GCCTCTGACTTACTGCCTGCGTTAAGTGCTGCTGC 2203 | ||||| || ||| ||| || ||| ||| ||| | |||| ||| | || Sbjct 1748872 TTTCTCTTTTATTATTTGTAATGCTGCATCT--CTTGGTGCATAA-TTAATCGCTTCAGC 1748928 Query 2204 GTAAGCGTCATTGGCTGATTGTTGTCCTCCTCTTGCAGATCTTCCATCGATCTGAAACTC 2263 ||| | || || || | | ||| || ||||||||||||| || ||||| || Sbjct 1748929 GTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATC 1748988 Query 2264 ACCCCAATCGATGGTGTCTCCGTCTTTATCGATGTAGGACTTGA--CATCAGATGAGGAT 2321 | ||||||| | |||||| || || || ||||| || || | ||||| | | ||| Sbjct 1748989 ATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGAT 1749048 Query 2322 TTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATGCCAGGTCGAAG 2381 ||||| |||| ||||||||||| || | | |||| || ||| | | |||||| Sbjct 1749049 TTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAA 1749107 Query 2382 AATCTGTTATTCGTGCACTGGTACTTGCCTTCGAACTGAACAAGGGCATGCAGATGAGGT 2441 || | | ||| ||||| | | || ||| ||||| | | |||||| ||| ||| Sbjct 1749108 AACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT-AGAGATTACATGCAAATGTGGT 1749166 Query 2442 TCCCCATTCTCGTGGAGCTCTCTGCAAATTTTAATGTATAATTT---ATTTACAGG--AG 2496 |||| | || ||| || |||||||| | ||| ||| ||||| |||| ||| || Sbjct 1749167 TCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTATG---AATTTAAGATTTGTAGGGTAG 1749222 Query 2497 TTTCGAGGGTTTGTAGTTGGGAAAGTGCTTCGGATAAAGAAAGAGAACA-CTGGGGATAA 2555 || |||| ||| || || ||| | || | | || |||| || |||| || Sbjct 1749223 TT--GAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AA 1749279 Query 2556 GTAAGGAAATAATTTTTGGCATTTATTTTAAAACGCTTTGGGGGAGCCATTTGGTCAATG 2615 || || |||||||||||| ||||||| |||| || ||||||||||| |||| Sbjct 1749280 GTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATTGGGAGCCATTTTTCAAATG 1749339 Query 2616 TACCCCGATTGA 2627 | |||||||| Sbjct 1749340 T-TACCGATTGA 1749350 Score = 93.3 bits (102), Expect = 7e-16 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 1297 TTCCTGATATTGTGGCTGAATCTTATCTGCATGGAAATGATGTCGTGGTTCATTAGAAAT 1356 ||||||| ||||| | |||| |||||| || |||||||||||||| | |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1357 GGCCTCTCGTTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAA 1416 | ||| | || | ||||||||||||||| |||| ||| || ||||| | | Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1417 ACGCCATTCTCTGCTTGATGAGC--AGTGATGAGTTCCCCTGTGCGTGAATCCATAGTTG 1474 || ||||| | ||| ||||| ||||| ||||||| ||| | ||||||| ||| Sbjct 1741997 ACACCATTGT-TGC--ACTGAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1475 ATGCAGTTGATGTGGAGGTAGTATGAGCAGCCACAATCTAGGTCTACACGCTTACGCCTG 1534 | ||||| ||||| |||| ||| ||| ||||| | || || | ||||| ||| Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTA 1742113 Query 1535 ATTG 1538 |||| Sbjct 1742114 ATTG 1742117 >seq3069 Length=10854949 Score = 105 bits (116), Expect = 1e-19 Identities = 172/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 1297 TTCCTGATATTGTGGCTGAATCTTATCTGCATGGAAATGATGTCGTGGTTCATTAGAAAT 1356 ||||||| ||| | ||||| |||||| || ||||||||||||| | |||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1357 GGCCTCTCGTTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAA 1416 || ||| | |||| ||||| |||||||||||||||||| || || || ||| | Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1417 ACGCCATTCTCTGCTTGATGAGCAGTGATGAG---TTCCCCTGTGCGTGAATCCATAGTT 1473 ||| |||| | ||| | ||| || |||| || ||| ||||| ||| ||| ||| Sbjct 3754528 ACGTCATTGT-TGC--ACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1474 GATGCAGTTGATGTGGAGGTAGTATGAGCAGCCACAATCTAGGTCTACACGCTTACGCCT 1533 |||| || |||| ||||||||| ||| ||||| | || | |||||||| | ||| Sbjct 3754585 CTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTTCTCCT 3754644 Query 1534 GATTG 1538 |||| Sbjct 3754645 AATTG 3754649 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 2235 CTTGCAGATCTTCCATCGATCTGAAACTCACCCCAATCGATGGTGTCTCCGTCTTTATCG 2294 || ||||||||||||||||| ||||| ||||||||||| | | |||||| || || || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2295 ATGTAGGACTTGACATCAGATGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTT 2354 ||||| || || |||| ||| | ||||| | ||||| |||||||||| || | Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2355 GATCTACTTGGGGATGCCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTGCCTTCG 2414 | ||| | ||| || | |||||| || || | || || || | | || ||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2415 AACTGAACAAGGGCATGCAGATGAGGTTCCCCATT 2449 || | | ||| | || | ||| |||||||| || Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTT 599044 Score = 80.6 bits (88), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1295 CCTTCCTGATATTGTGGCTGAATCTTATCTGCATGGAAATGATGTCGTGGTTCATTAGAA 1354 ||| | ||||||||| | |||| ||| || || || ||||||||||| | | Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1355 ATGGCCTCTCGTTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAA 1414 |||| || | |||| ||||||||||||||| || |||| || ||||| | Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCAT 596533 Query 1415 AAACGCCATTCTCTGC-TTGATGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATAGTT 1473 | |||||||| | ||| || |||||| ||||||| |||| ||||||| ||| Sbjct 596532 ATACGCCATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Query 1474 GATGCAGTTGATGTGGAGGTAGTATGAGCAGCCACAATCTA 1514 |||| || || || |||| |||| ||| ||||||| || Sbjct 596473 CCTGCAATTAATATGTTGGTAATATGTGCAACCACAATATA 596433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8780471735280