Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006358.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq1694 82.4 1e-12 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 1617 ACCAGGATTGCAGAGGAAGATTGTTGGGATTCCTCCTTTAATTTGAATAGGTTTCCCGTA 1676 ||| ||||| || | | ||||| || ||| | | ||||||||||| | ||||||| || Sbjct 599792 ACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATA 599733 Query 1677 CTTGCAGTTCGATTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTC-AT------ATGTT 1729 |||||| | |||||| ||| | || |||| |||||||| ||| || || || Sbjct 599732 CTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTT 599673 Query 1730 TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACGCATTATTAGAGTATACT 1788 | || ||||| ||| || | ||||||||| | |||| |||| ||| || ||||| Sbjct 599672 TAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACT 599615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607687389720