Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006384.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq3069 89.7 9e-15 seq519 87.8 3e-14 seq1694 80.6 5e-12 >seq3069 Length=10854949 Score = 89.7 bits (98), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1286 CAACGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATTATGTCGTGTTTCGT 1345 ||| |||||||| |||||| | |||||||| | || || || |||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1346 CAGAAATGGTCTCTCGTCGTGGTTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCA 1405 |||||||||| | ||| |||| ||||||||||||||||||| || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1406 GATATATACGCCATTCTCTGC-TTGAGCTGCAGTGATAGTTTCCCCTGTGCGAGAATCCA 1464 ||||||||| |||| | ||| | ||| | ||||| | ||| ||| |||||| ||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1465 T 1465 | Sbjct 3754580 T 3754580 >seq519 Length=3254320 Score = 87.8 bits (96), Expect = 3e-14 Identities = 232/352 (66%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 2225 CCTCTTGCAGAGCGTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTC 2284 || || ||||| | ||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2285 TCCAGGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2344 || | ||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2345 GCTGACCTGGTTGGG-GAGACCAGGTCGAAGAATCTGTTATTTTGGCATTTGTATTTGCC 2403 | ||| | ||| || | | ||| || |||| | ||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2404 TTCAAATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAATTCGCTGCAGat 2463 | || |||||||| || || | ||| || ||| | || | ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2464 tttgatgtattttttatttgttggggtgtttaggttttttatttgGGAAAGTGCCTCTTC 2523 | | ||| ||||| |||||| ||| ||| ||| |||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2524 TTTAGTAAGAGAGCATTGTGGATAAGTGAGGAAATAGTTTTTGGCATATATT 2575 ||| || || || ||| ||| |||||||||||| |||||| || |||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 147/215 (68%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 1645 CTCTTCGTCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGT 1704 |||||| ||| ||| |||||||| || | | |||||||| || | | ||| | Sbjct 599828 CTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGA 599769 Query 1705 TGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCT 1764 || ||| ||| ||||||||||| ||||||| ||||| | |||||||| || | Sbjct 599768 TGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTT 599709 Query 1765 TTGGGCCCCCATGAATTCTTTAAAGTGC-------TTTAGATAGTGGGGGTCTACGTCAT 1817 ||| |||| || |||||||| | ||| || || |||||| | || | |||| Sbjct 599708 TTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAG-CTGCATCAT 599650 Query 1818 CAATGACGTTATACCAAGCATCATTATTGTATACT 1852 ||||| | |||| |||||||| | | ||||| Sbjct 599649 CAATGTCATTATCTGGTGCATCATTCTAGAATACT 599615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8642886111388