Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006631.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq519 125 1e-25 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 263/380 (69%), Gaps = 18/380 (5%) Strand=Plus/Plus Query 2218 ACCTCCTCTAGCTGATCTTCCATCGACTTGGAAA--ATTCCATGATCAAGGATGTCTCCG 2275 || ||| ||||| ||||||||||| | ||| ||| || || ||| | | |||||| Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCA--ATCTACGTAGTCTCCC 1743195 Query 2276 TCTTTCTCCACGTAGGTTTTGACATC---GCTTGAGCTTTTAGCTCCCTGAATGTTTGGA 2332 || || || | ||| | ||| |||| | |||| ||||| |||| ||| || Sbjct 1743196 TCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGA 1743252 Query 2333 TGGAAATGTGCTGACCTGCTTGGG-GATGTGAGGTCGAAGAATCTATTGTTTC-TACACT 2390 ||||| || | ||| | ||| ||| | | ||| || |||| |||| || | || Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATC-ATTGATTGGTGCAAC 1743310 Query 2391 GGAATTTCCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATTTTTATGAAGCT 2450 |||||| ||| ||| ||||| || ||||||| || || | ||| || | || || | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2451 CTCTGCAGATTCTAATGAATTTTATGGAAGTTGGGGTTTGGAGATTTAATAATTGGGAAA 2510 || |||| | ||| |||||||||| || ||| | ||| || | || || Sbjct 1743371 CTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2511 GTGCCTCTTCTTTTGTGAGGGAGCA-CTTGGGATAAGTGAGGAAATAATTTTTGGCATTT 2569 | || || |||||||||||||| || ||||||| |||||||||||| ||||||| |||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2570 ATTTTAAACCGATTGGGGGC 2589 ||| |||||| ||||| || Sbjct 1743490 ATTCTAAACC--TTGGGAGC 1743507 Score = 111 bits (122), Expect = 3e-21 Identities = 336/500 (67%), Gaps = 23/500 (5%) Strand=Plus/Plus Query 2090 AAATTTGAATTTAAATTATGAAATTGAAGTA-GAAAGTCTCTTGGGGCTTTCTCCTTCAA 2148 ||||| ||||| ||||||||| |||| || | |||| ||| ||||| ||||||| || | Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT-TTGGGTCTTTCTCTTTTAT 1748883 Query 2149 TATATTGAGGGCCTGAGCT-TTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGG 2207 ||| | | || | || |||| | | || || || || || ||| | || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCTTCAGCGTATACATCTGCAA 1748942 Query 2208 CAGTCTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAA--ATTCCATGATCAAG 2265 | | | || ||| ||| | ||||||||||| | ||| ||| || ||| ||| | Sbjct 1748943 CTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCA--ATCTAC 1749000 Query 2266 GATGTCTCCGTCTTTCTCCACGTAGGTTTTGAC--ATC---GCTTGAGCTTTTAGCTCCC 2320 |||||| || || || | ||| | ||| || ||| | |||| |||||| Sbjct 1749001 ATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATAT 1749057 Query 2321 TGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGTCGAAGAATCTATTG 2380 |||| ||||||||||| || | || | ||| ||| | |||||| || | |||| Sbjct 1749058 TGAACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACC-ATTG 1749115 Query 2381 TTTC-TACACTGGAATTTCCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATT 2439 || | || |||||||||| ||||| || || ||||||| || || ||||| || Sbjct 1749116 ATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGG-TTCCCGTT 1749173 Query 2440 TTTATGAAGCTCTCTGCAGATTCTAATGAATTTTATGGAAGTTGGGGTTTGGAGATTTAA 2499 | || || |||||||| | | | |||||||| | || ||| | ||| ||| Sbjct 1749174 GCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTT 1749233 Query 2500 TAATTGGGAAAGTGCCTCTTCTTTTGTGAGGGAGCA-CTTGGGATAAGTGAGGAAATAAT 2558 | || ||| | || ||||||||||| | || ||||||| ||||||| ||||||| Sbjct 1749234 GAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAAT 1749292 Query 2559 TTTTGGCATTTATTTTAAAC 2578 ||||| ||||||| ||||| Sbjct 1749293 TTTTGCTATTTATTCTAAAC 1749312 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 2392 GAATTTCCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATTTTTATGAAGCTC 2451 |||||||||| |||||||| || || |||| || || | ||| | | || || || Sbjct 588222 GAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGTGCTGTGCAGTTC 588163 Query 2452 TCTGCAGATTCTAATGAATTTTA----TGGAAGTTGGGGTTTGGAGATTTAATAATTGGG 2507 |||||| | || |||||||| | || ||| | | | ||| ||| | || Sbjct 588162 TCTGCACACACTTATGAATTTGAAATTTGTAAGATAG----TTGAGGTTTTTGAGATGAT 588107 Query 2508 AAAGTGCCTCTTCTTTTGTGAGGGAGCA-CTTGGGATAAGTGAGGAAATAATTTTTGGCA 2566 ||| | || ||||||| ||| || || ||||||| ||||||||||||| |||| | | Sbjct 588106 GAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAGTTTTAGCTA 588048 Query 2567 TTTATTTTAAACC 2579 |||||| |||||| Sbjct 588047 TTTATTCTAAACC 588035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681284716844