Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006874.1 Length=2777 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq3069 91.5 3e-15 seq2957 89.7 9e-15 seq1694 86.0 1e-13 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 240/345 (70%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 2236 TCCCCTTGCAGATCTGCCATCAATTTGAAATTCTCCCCATTCGATGGTGTCTCCGTCCTT 2295 |||||| |||||||| |||||||||||||| || | || || | | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2296 GTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2355 ||||| || || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2356 TGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTAC 2414 | ||| | ||| |||| | ||| || |||| ||||| ||||| | | |||| Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2415 CTTCGAATTGGATAAGCACATGGAGGTGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAA 2474 || ||| |||||||| ||||| | || |||||||| || ||| || ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2475 TTTTGATGAACAGTTTATTTACTGGGGT--TTGTAGGGATTGTATTTGGGAAAGTGTTTC 2532 | | ||||| | |||| | |||| ||| ||| || | || ||| | || Sbjct 1743380 CTCTTATGAATTTTAGATTT-GTAGGGTAGTTG-AGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2533 CTCTTTGGTGAGAGAGCACTTTGGATAAGTGAGGAAATAATTTTT 2577 ||||| ||||| || || |||| |||||||||||| |||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT 1743482 Score = 100 bits (110), Expect = 5e-18 Identities = 162/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 1302 TTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAAT 1361 |||||||| |||| |||||| ||||||||| | |||||||||||||| |||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1362 GGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCA--GATAA 1419 | || | | || | || ||| |||||||||||| ||| || ||||| |||| Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1420 ACACGCCATTCTGTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTT 1478 ||| ||||| | ||| |||| | ||||| ||||||| ||| | ||||||| ||| Sbjct 1741997 ACA--CCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1479 GGAGCAGTCGATGTGGAGATAATATGAGCAGCCGCAGTCTAGGTCAA 1525 |||| ||||| | |||||| ||| || |||| || |||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 86.0 bits (94), Expect = 1e-13 Identities = 233/348 (67%), Gaps = 13/348 (4%) Strand=Plus/Plus Query 2236 TCCCCTTGCAGATCTGCCATCAATTTGAAATTCTCCCCATTCGATGGTGTCTCCGTCCTT 2295 |||||| ||||||| |||||||||||||| || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2296 GTCGATATAGGACTTGA--CGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAA 2353 || || || || || | | || || | |||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2354 TGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTA 2413 || | || || ||| | | |||||| || | ||||| ||||| | | || Sbjct 1749076 TGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2414 CCTTCGAATTGGATAAGCACATGGAGGTGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAA 2473 ||| ||| | || | ||||| | || ||||||| | || ||| || |||||||| Sbjct 1749135 CCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCAC 1749192 Query 2474 ATTTTGATGAACAGTTTA--TTTACTGGGGT--TTGTAGGGATTGTATTTGGGAAAGTGT 2529 | ||| ||||| |||| || | |||| ||| ||| || | || ||| Sbjct 1749193 ACTTTTATGAA---TTTAAGATTTGTAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAAC 1749248 Query 2530 TTCCTCTTTGGTGAGAGAGCACTTTGGATAAGTGAGGAAATAATTTTT 2577 || ||||| ||||| | || |||| ||||||| ||||||||||| Sbjct 1749249 ATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTT 1749296 >seq3069 Length=10854949 Score = 91.5 bits (100), Expect = 3e-15 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 1302 TTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAAT 1361 |||||||||||| ||||||| ||||||||| | ||||||||||||| |||| ||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1362 GGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCAGATAAAC 1421 || || | | ||| | || | | ||||||| |||||||| || || || ||| | Sbjct 3754468 GGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATAT 3754527 Query 1422 ACGCCATTCTGTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGG 1480 ||| |||| | ||| || || | ||||| || ||| ||||| ||| ||| ||| Sbjct 3754528 ACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCT 3754586 Query 1481 AGCAGTCGATGTGGAGATAATATGAGCAGCCGCAGTCTAGGTCAACCCGTTT 1532 ||| | |||| | || |||| ||| || || | || | ||| || || Sbjct 3754587 TGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTT 3754638 >seq2957 Length=4215098 Score = 89.7 bits (98), Expect = 9e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 1302 TTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAAT 1361 ||| ||||||||| |||||| ||||||||||| ||||||| | | || |||||||| Sbjct 1238755 TTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAAT 1238814 Query 1362 GGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCAGATAAAC 1421 | || ||| ||| | || ||| |||||||| || |||| || ||| || || | Sbjct 1238815 GATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATAT 1238874 Query 1422 ACGCCATTCTGTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGG 1480 || |||| | ||| ||||| ||| ||| | | | | ||||| ||||||| ||| Sbjct 1238875 ACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCA 1238933 Query 1481 AGCAGTCGATGTGGAGATAATAT-GAGCAGCCGCAGTCTAGGTCA 1524 ||| ||||| | |||||| | ||| || || | ||| ||| Sbjct 1238934 TATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 1300 CCTTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGA 1359 ||| | ||| |||| |||||| ||| ||||| | || ||||||||||| |||||| Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1360 ATGGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCAGATAA 1419 |||| | | | ||| | || ||| |||||||||| |||| || ||||| | Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCAT 596533 Query 1420 ACACGCCATTCTGTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTT 1478 | |||||||| | ||| | ||| |||||| ||||||| |||| ||||||| ||| Sbjct 596532 ATACGCCATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Query 1479 GGAGCAGTCGATGTGGAGATAATATGAGCAGCCGCA 1514 ||| | || || | ||||||| ||| || || Sbjct 596473 CCTGCAATTAATATGTTGGTAATATGTGCAACCACA 596438 Score = 78.8 bits (86), Expect = 2e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1302 TTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAAT 1361 ||||||| || || |||||| ||||| ||| | ||||||||| |||| |||||||| Sbjct 600229 TTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTGAAT 600170 Query 1362 GGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATT 1402 || || | | ||| | || ||| |||||||||||||||| Sbjct 600169 GGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATT 600129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8774071974540