Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006876.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq519 116 6e-23 seq3069 89.7 9e-15 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 116 bits (128), Expect = 6e-23 Identities = 246/357 (69%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 2236 TCCCCTTGCAGATCTTCCATCGATCTGAAATTCTCCCCACTCGAGGGTGTCTCCGTCCTT 2295 |||||| |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2296 GTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2355 |||||||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2356 TACTGACCTGGTTGGG-GACACCAGGTCGAACAGTCTGCAATTTGTGATGCGGATTTTCC 2414 | | ||| | ||| || | | ||| || | || ||| ||| | || ||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2415 CTTCGAACTGGATAA--ACATGTGGATGTGAGGTTCCCCATTCTGGTGGAGTTCCTTGCA 2472 || ||| ||||||| ||||| |||| |||||||| || ||| ||||| ||||| Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGT--GGTTCCCCGTTGCTGTGTAGTTCTTTGCA 1743377 Query 2473 GATTTTGATGAATTTAGGGTTTGAAGGAAGAGAT-AGGTTTTGAATTTGGGAAAGTGTTT 2531 | | | |||||||| | |||| ||| || | ||| ||| | || ||| | | Sbjct 1743378 CACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2532 CCTCTTTGCTGAGAGTGCATTGTGGATAAGTGAGGAATATGTTTTTTGC-ATTTATT 2587 | ||||| |||| | ||| ||| |||||||||| ||| ||||||| ||||||| Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAA-ATGATTTTTGCTATTTATT 1743492 Score = 93.3 bits (102), Expect = 7e-16 Identities = 157/219 (72%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 1302 TTCCTCAGGTTGTGGTTGAATCGTATCTGGACTGATATGATGTCGTGGGGCATGTTGAAT 1361 ||||| || |||| |||||| ||||||||| | ||||||||||||| |||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1362 GGCCGGTTCACGTGGTCG-ATGATCTTGAAATACAGGGGATTTTGTATCTCCCA--GATA 1418 | | || || ||| | ||||||||||| |||| |||| ||| ||||| |||| Sbjct 1741937 TGTCTCCTCTGGT-TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1419 AACACGCCACTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGT 1477 ||| ||| | | ||| ||||| ||||| ||||||| ||| || ||||||| || Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1478 GTATGCAGTTGATGTGGAGATAATATGAGCAGCCGCAGT 1516 | ||||| ||||| | |||||| ||| || |||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGT 1742090 Score = 91.5 bits (100), Expect = 3e-15 Identities = 241/357 (68%), Gaps = 11/357 (3%) Strand=Plus/Plus Query 2236 TCCCCTTGCAGATCTTCCATCGATCTGAAATTCTCCCCACTCGAGGGTGTCTCCGTCCTT 2295 |||||| ||||||||||||| || ||||| || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2296 GTCGATGTAGGACTTGA--CGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAA 2353 || ||||| || || | | || || | |||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2354 TGTACTGACCTGGTTGGGGACACCAGGTCGAACAGTCTGCAATTTGTGATGCGGATTTTC 2413 || | | || || ||| | |||||| | | ||| ||| || || |||| Sbjct 1749076 TGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2414 CCTTCGAACTGGATA-AACATGTGGATGTGAGGTTCCCCATTCTGGTGGAGTTCCTTGCA 2472 ||| ||||| || | ||||| |||| ||||||| | || ||| ||||| |||| Sbjct 1749135 CCTGTGAACTAGAGATTACATGCAAATGT--GGTTCCCGTTGCT-GTGTAGTTCTCTGCA 1749191 Query 2473 GATTTTGATGAATTTAGGGTTTGAAGGAAGAGAT-AGGTTTTGAATTTGGGAAAGTGTTT 2531 | ||| ||||||||| | |||| ||| || | ||||||| | || ||| | Sbjct 1749192 CACTTTTATGAATTTAAGATTTGTAGG-GTAGTTGAGGTTTTTGAGATGACGAAGAACAT 1749250 Query 2532 CCTCTTTGCTGAGAGTGCATTGTGGATAAGTGAGGAATATGTTTTTTGC-ATTTATT 2587 | ||||| |||| ||| ||| |||||| ||| || ||||||| ||||||| Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGAAAGTGA-GAAAATAATTTTTGCTATTTATT 1749306 >seq3069 Length=10854949 Score = 89.7 bits (98), Expect = 9e-15 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 1302 TTCCTCAGGTTGTGGTTGAATCGTATCTGGACTGATATGATGTCGTGGGGCATGTTGAAT 1361 ||||| |||||| ||||||| ||||||||| ||||||||||||| |||| ||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1362 GGCCGGTTCACGTGGTCGATG--ATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAA 1419 || | || || ||| ||| | ||||||||| ||||||||| ||| || || ||| Sbjct 3754468 GGTCTCCTCTGGT-GTC-ATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATAT 3754525 Query 1420 ACACGCCACTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTG 1478 | ||| || | | ||| | ||| | ||||| || ||| |||||| ||| ||| || Sbjct 3754526 ATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1479 TATGCAGTTGATGTGGAGATAATATGAGCAGCCGCA 1514 |||| || |||| | || |||| ||| || || Sbjct 3754585 CTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 1311 TTGTGGTTGAATCGTATCTGGACTGATATGATGTCGTGGGGCATGTTGAATGGCCGGTTC 1370 |||| |||||| |||| |||| ||| ||||||||| |||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1371 ACGTGGTCGA-TGATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAACACGCCACT 1429 ||| ||| | ||||||||||| || ||||| ||| ||||| | | |||||| | Sbjct 596581 TAGTG-TCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1430 CTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTGTATGCAGTTG 1488 | ||| |||| |||||| ||||||| |||| | ||||||| || |||| || Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTA 596464 Query 1489 ATGTGGAGATAATATGAGCAGCCGCA 1514 || || | ||||||| ||| || || Sbjct 596463 ATATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745273051210