Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_006995.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq2957 102 1e-18 seq1694 95.1 2e-16 seq3069 89.7 9e-15 seq519 82.4 1e-12 >seq2957 Length=4215098 Score = 102 bits (112), Expect = 1e-18 Identities = 183/255 (72%), Gaps = 13/255 (5%) Strand=Plus/Plus Query 1292 AACGCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATATGGATAATGTCGTGGTTTTCG 1351 || || ||| ||||||||| ||||||| |||| ||||| | || |||| | | || | | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1352 TTGAATGGCCGCCGTTGGTGGTTGAGG--ATCTTGAAATATAGGGGATTTATGATTTCCC 1409 ||||||| | || |||||| | | | ||||||||||| || ||||| | |||| Sbjct 1238809 TTGAATGATCTCCTTTGGTG--TCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCT 1238866 Query 1410 AGGTATGTACGCCATTCATTGC-TTGAGCTGCAGTGATGGACTCC-CCTGTGCGTAAATC 1467 |||||| ||| |||| |||| ||||| ||| ||| || ||| | ||||| ||||| Sbjct 1238867 AGGTATATACTTCATT-GTTGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATC 1238924 Query 1468 CATGATGTTCGCA-GTTTATTGTTC-TGT-ATATGGAACACCCACACGGTAGATCAATTC 1524 ||| ||||| | ||| ||| | || |||||| || |||||| ||||||| | | Sbjct 1238925 CAT--TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTAC 1238982 Query 1525 TCTTCCTGCGAATTG 1539 ||| || | ||||| Sbjct 1238983 GCTTTCTTCTAATTG 1238997 >seq1694 Length=789422 Score = 95.1 bits (104), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 1293 ACGCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATATGGATAATGTCGTGGTTTTCGT 1352 || ||| | ||| |||| ||||||| |||||||||| | |||||||||||||| | || Sbjct 596655 ACCCCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGT 596596 Query 1353 TGAATGGCCGCCGTTGGTGGTTGAG-GATCTTGAAATATAGGGGATTTATGATTTCCCAG 1411 ||||||| || | || || | | ||||||||||| || ||||| | |||||| Sbjct 596595 TGAATGGTGTCCTCTAGT-GTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAA 596537 Query 1412 GTATGTACGCCATTCATTGC-TTGAGCTGCAGTGATGGACTCCCCTGTGCGTAAATCCAT 1470 | || ||||||||| |||| |||| |||||| ||||| |||| |||||||| Sbjct 596536 GCATATACGCCATT-GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 82.4 bits (90), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 1295 GCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATATGGATAATGTCGTGGTTTTCGTTG 1354 || ||||||| || || ||||||| ||| | ||| | || |||||| |||| | |||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1355 AATGGCCGCCGTTGGTGGTTGAGG--ATCTTGAAATATAGGGGATTTATGATTTCCCAGG 1412 ||||| | || ||||| | | | ||||||||||| ||||||||| | ||| || | Sbjct 600172 AATGGTCTCCTCTGGTG--TCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAG 600115 Query 1413 TATGTACGCCATTCAT 1428 ||| |||| |||| || Sbjct 600114 TATATACGTCATTGAT 600099 >seq3069 Length=10854949 Score = 89.7 bits (98), Expect = 9e-15 Identities = 137/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 1291 CAACGCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATATGGATAATGTCGTGGTTTTC 1350 ||| || |||||||||||| |||||| |||| ||||| | || |||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1351 GTTGAATGGCCGCCGTTGGTGGTTGAGG--ATCTTGAAATATAGGGGATTTATGATTTCC 1408 ||| ||||| | || ||||| | | | | ||||||||||||||||||| | ||| Sbjct 3754461 GTTAAATGGTCTCCTCTGGTG--TCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1409 CAGGTATGTACGCCATTCATTGC-TTGAGCTGCAGTGATGGACTCCCCTGTGCGTAAATC 1467 || ||| |||| |||| |||| | ||| | ||||| | ||| ||||| |||| Sbjct 3754519 CAAATATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1468 CATGATGTTC 1477 ||| ||||| Sbjct 3754578 CAT--TGTTC 3754585 >seq519 Length=3254320 Score = 82.4 bits (90), Expect = 1e-12 Identities = 127/175 (73%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 1298 TTCCTGAGGTTGTGGTTGAACCGTATTTGGATATGGATAATGTCGTGGTTTTCGTTGAAT 1357 |||||||| |||| |||||| |||| ||||| | || ||||||||||| | ||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1358 GGCCGCCGTTGGTGGTTGAG-GATCTTGAAATATAGGGGATTTATGATTTCCCAGGTATG 1416 | | || |||| | | | ||||||||||| |||| |||| | |||||| | || Sbjct 1741937 TGTCTCCTCTGGT-TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1417 TACGCCATTCATTGC-TTGAGCTGCAGTGATGGACTCCCCTGTGCGTAAATCCAT 1470 ||| ||||| |||| ||||| ||||| ||||| ||| | |||||||| Sbjct 1741996 TACACCATT-GTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 77.0 bits (84), Expect = 6e-11 Identities = 244/371 (66%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 2231 CAGATCGTCCGTCGATCTGAAATTCTCCCCATTCGATTGTGTCACCGTCCTTGTCCAGAT 2290 |||||| ||| || || ||||| || |||| || | ||| || ||||| || | | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2291 AGGACTTGACG--TCGGAGCTTGATTTAGCTCCCTGAATATTTGGATGGAAATGTGTTGA 2348 | || || || || || |||||||||| |||| |||||||||||| || | | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2349 CCTGGTTGGGGAGACCATGTCGAAGAATCTGTTATTCGAGCATTTGTATTTCCCCTCGAA 2408 || || ||| |||||||| || | | ||| | ||| | ||||||| ||| Sbjct 1749084 TCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2409 TTGCATAAGCACGTGGAGATGAGGGCTCCCATCCTCGTGTAATTCTCTGCAGATCtttat 2468 | | | || || | ||| || |||| | ||||| ||||||||| | ||||| Sbjct 1749143 CTAGA-GATTACATGCAAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2469 aaattttttattaattggagtttttaggtttttgatttGGGAAAGTGCTTCCTCTTTGGT 2528 ||||| ||| | || || |||||||||| || ||| | || ||||| || Sbjct 1749201 GAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGT 1749260 Query 2529 GAGGGAGCAATGTGGATATGTGAGGAAATAGTTTTTTGCATTTATT-TGAAAACGTTTGG 2587 ||| | || ||| | ||||| ||||| ||||| ||||||| | || | ||| Sbjct 1749261 GAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATT 1749320 Query 2588 GAGGAGCCATT 2598 | ||||||||| Sbjct 1749321 G-GGAGCCATT 1749330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678084833056