Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007210.2 Length=2758 Score E Sequences producing significant alignments: (Bits) Value seq519 86.0 1e-13 seq1129 84.2 4e-13 seq1694 82.4 1e-12 >seq519 Length=3254320 Score = 86.0 bits (94), Expect = 1e-13 Identities = 245/365 (67%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 2236 TGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAACACCCCAGTCGACGTAATCA 2295 |||| || ||| |||||||||||||| || | ||||||| || | || || ||||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2296 CCGTCCTTCTCGATATAGGACTTGACATCAGAACTGGACTTGGCTCCTTGGAAGTTCGGA 2355 || ||||| ||||| || || || |||| ||| | || || | ||| | || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2356 TGGAATTGTGAGGAGGTGTTGGGATGCGTAATGTCAAAATGCCTGGGGTTCCTGAATTGG 2415 |||||||| || |||| || || ||||||||| | | || || | | Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAG 1743312 Query 2416 GCTTTACCTTTGAATTGGATGAGGGCATGGAGATGCAGTGTCCCATCGGAGTGT--TTCT 2473 ||||||| |||| ||||| || |||| | ||| || ||| | | |||| |||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2474 CTTGAGCTACTCTGATGAATAATTTATCGGATGGGCAGTGAATAGCCTTT-ATAAGCTCT 2532 ||| | ||||| |||||| | || | ||| ||| | || ||| | | | | Sbjct 1743373 -TTGCAC-ACTCTTATGAATTTTAGATTTGTAGGGTAGTTGA-GGCTTTTGAGATGATGA 1743429 Query 2533 AGTGCCTCTTCTTTGGGAATAGGGCAT-TTGGGATAAGTGAGAAATATGTTTTTGGCT-T 2590 || || || ||||| | | | ||| |||||| ||||||| || ||| |||| ||| | Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAA-ATGATTTTTGCTAT 1743487 Query 2591 TTATT 2595 ||||| Sbjct 1743488 TTATT 1743492 Score = 84.2 bits (92), Expect = 4e-13 Identities = 185/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 2093 GAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAACTGAAATAT-ATATTCT 2151 |||| || || || | | | ||||||||||| ||||| ||| | || | || | | ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2152 TTAGGTAATTTTTCTCTAATAATAGATAAAGCAGCTTCCTTTGAACCTGCATTCAGCGCT 2211 || ||| ||| ||| | || || ||| || || || ||| | ||| | |||| Sbjct 1748865 TTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAATTAATCGCT 1748923 Query 2212 TCTGCTGCTGCATCATTAGCCGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGA 2271 || || | |||| | | | | || || ||| ||| |||||||||| || | |||| Sbjct 1748924 TCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGA 1748983 Query 2272 AAAACACCCCAGTCGACGTAATCACCGTCCTTCTCGATATAGGACTTGA--CATCAGAAC 2329 ||| || |||| || || || || || ||||| || || || || || | ||||| | Sbjct 1748984 AAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGG 1749043 Query 2330 TGGACTTGGCTCCTTGGAAGTTCGGATGGAATTG 2363 | || || || ||| | || ||||||||||| Sbjct 1749044 TTGATTTAGCATATTGAACATTTGGATGGAATTG 1749077 >seq1129 Length=1508174 Score = 84.2 bits (92), Expect = 4e-13 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 1308 TTTCCTCAGGTTGTAGTTGAACTGGACCTGGATTGTTATTACGTCGTGGTCCCTCAGGAA 1367 |||||| | ||||||||||||||| | |||||| ||| | || |||| | ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1368 TGGCCTCTCCAGGTGCTTGGTAATCTTGAAATAGAGGGGATTTCTGACCGTCCAGGTATA 1427 || ||| | |||| | || |||||| ||||| ||||| || || ||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1428 GACGCCACTCTCTGCCTGAGTTGCAGTGATGTACTCCCCGGTGCGAAAATCCATGGTT 1485 |||||| | | | || ||| ||| ||| || | |||||| ||||||||||| ||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGAGATA-TTCCCGGTACGAAAATCCATCGTT 693600 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 2233 GTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAACACCCCAGTCGACGTAA 2292 || |||| || || |||||||||||||| |||| ||||||| ||||||| || ||||| Sbjct 599272 GTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAG 599213 Query 2293 TCACCGTCCTTCTCGATATAGGACTTGACATCAGA 2327 || || ||||| || || || || || |||| ||| Sbjct 599212 TCTCCCTCCTTTTCAATGTATGATTTAACATTAGA 599178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8716483438512