Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007211.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq3069 100 5e-18 seq2957 89.7 9e-15 seq1694 89.7 9e-15 seq519 89.7 9e-15 seq1129 77.0 6e-11 >seq3069 Length=10854949 Score = 100 bits (110), Expect = 5e-18 Identities = 147/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 1306 CAAAGCCTTCCGCAGGTTGTAGTTGAACTGTATCTGAA-CTGTAATGATGTCGTGTTCCC 1364 ||| || |||| |||||| ||||||| |||||||| | || || |||||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTA-TGATGTCGTGGT--C 3754457 Query 1365 GTAG--GAATGGTCTGCTGTCGTGTTTGATGATCTTGAAATATAGGGGATTGGTTATTTC 1422 || | |||||||| || | |||| | | |||||||||||||||||| | || ||| Sbjct 3754458 GTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTC 3754517 Query 1423 CCAGGTATACACGCCATTCTCTGC-CTGAGCTGCAGTGATGTATTCCCCTGTGCGTGAAT 1481 || |||| ||| |||| | ||| || ||| | ||||| | || ||| ||||| ||| Sbjct 3754518 TCAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAAT 3754576 Query 1482 CCATAGTTGTGACAGTCAATG 1502 ||| ||| | || | |||| Sbjct 3754577 ACATTGTTCTTGCAATTAATG 3754597 >seq2957 Length=4215098 Score = 89.7 bits (98), Expect = 9e-15 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 1319 AGGTTGTAGTTGAACTGTATCTGAACTGT-AATGATGTCGTGTTCCCGTAG--GAATGGT 1375 ||||||| ||||||||||||||| | ||| ||||||| | ||| || | ||||| | Sbjct 1238761 AGGTTGTCGTTGAACTGTATCTGGA-TGTCTATGATGTTGAGTT--TGTTGTTGAATGAT 1238817 Query 1376 CTGCTGTCGTGTTTGATGATCTTGAAATATAGGGGATTGGTTATTTCCCAGGTATACACG 1435 || || | |||| | ||||||||||| || |||| | || |||| ||||||| || Sbjct 1238818 CTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATATACT 1238877 Query 1436 CCATTCTCTGC-CTGAGCTGCAGTGATGTATTCCCCTGTGCGTGAATCCATAGTTGTGAC 1494 |||| | ||| |||||| ||| ||| || | | | ||||| ||||||| ||| | Sbjct 1238878 TCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCATAT 1238936 Query 1495 AGTCAATG 1502 ||| |||| Sbjct 1238937 AGTTAATG 1238944 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 1322 TTGTAGTTGAACTGTATCTGAA-CTGTAATGATGTCGTG-TTCCCGTAGGAATGGTCTGC 1379 ||||||||||||||||| || | || || | |||||||| || || | |||||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTA-TAATGTCGTGGTTGTTGTTG-AATGGTGTCC 596584 Query 1380 TGTCGTGTTTGATGATCTTGAAATATAGGGGATTGGTTATTTCCCAGGTATACACGCCAT 1439 | | |||| | ||||||||||| || |||| | || |||||| | ||| ||||||| Sbjct 596583 TCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCAT 596524 Query 1440 TCTCTGC-CTGAGCTGCAGTGATGTATTCCCCTGTGCGTGAATCCATAGTT 1489 | | ||| | |||| |||||| | |||||| |||| ||||||| ||| Sbjct 596523 TGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Score = 77.0 bits (84), Expect = 6e-11 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 1310 GCCTTCCGCAGGTTGTAGTTGAACTGTATCT-GAACTGTAATGATGTCGTG-TTCCCGTA 1367 || |||| | || ||||||||||| ||||| || || || |||||||| | || || Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTA-TGATGTCGAGGTTGTTGTT 600174 Query 1368 GGAATGGTCTGCTGTCGTGTTTGATGATCTTGAAATATAGGGGATTGGTTATTTCCCAGG 1427 | |||||||| || | |||| | ||||||||||| |||||||| | || ||| || | Sbjct 600173 G-AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAG 600115 Query 1428 TATACACGCCATT 1440 |||| ||| |||| Sbjct 600114 TATATACGTCATT 600102 >seq519 Length=3254320 Score = 89.7 bits (98), Expect = 9e-15 Identities = 139/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 1313 TTCCGCAGGTTGTAGTTGAACTGTATCTGAACTGTAATGATGTCGT-GTTCCCGTAGGAA 1371 |||| || ||||||||||| |||||||| | | |||||||||| ||| || || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGT-TAAA 1741935 Query 1372 TGGTCTGCTGTCGTGTTTGATGATCTTGAAATATAGGGGATTGGTTATTTCCCAGGTATA 1431 | |||| || | || | | ||||||||||| |||| ||| | || |||||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1432 CACGCCATTCTCTGC-CTGAGCTGCAGTGATGTATTCCCCTGTGCGTGAATCCATAGTTG 1490 || ||||| | ||| |||||| ||||| | |||||| ||| | ||||||| ||| Sbjct 1741996 TACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1491 TGACAGTCAATG 1502 ||||| |||| Sbjct 1742054 CTACAGTTAATG 1742065 >seq1129 Length=1508174 Score = 77.0 bits (84), Expect = 6e-11 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 1313 TTCCGCAGGTTGTAGTTGAACTGTATCT-GAACTGTAATGATGTCGT-GTTCCCGTAGGA 1370 |||| | |||||||||||||||||||| || || | ||||||| || | | || || Sbjct 693774 TTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCT-ATGATGTTGTGGATGTTGT-TGA 693717 Query 1371 ATGGTCTGCTGTCGTGTTTGATGATCTTGAAATATAGGGGATTGGTTATTTCCCAGGTAT 1430 | ||||| || | ||||| | |||||| |||| ||||| | | |||||| |||| Sbjct 693716 ACGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTAT 693658 Query 1431 ACACGCCATTCTCTGCCTGAGCTGCAGTGATGTATTCCCCTGTGCGTGAATCCATAGTT 1489 | |||||||| | | || || ||| ||| |||| ||| || || ||||||| ||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCATCGTT 693600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268