Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007290.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq519 134 2e-28 seq1694 93.3 7e-16 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 134 bits (148), Expect = 2e-28 Identities = 248/355 (70%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 2227 TCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTT 2286 ||| || || ||||||||||| || ||||| || | || || | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2287 GTCGATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2346 |||||||| || |||| ||| ||||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2347 TGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCC 2405 | ||| | ||| |||| | ||| || |||| ||||| ||| | | || | Sbjct 1743261 AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2406 CTTCGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGA 2465 || ||| ||||| || || || | ||| |||||||| || || || ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2466 -TCTTGATGAATTTTTTATTTGTAGGAGT--TTGTAGGTTTTGAAGTTGGGAAAGTGCTT 2522 |||| ||||||||| ||||||||| || ||| | |||||| | || ||| || | Sbjct 1743380 CTCTT-ATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGA-GATGATGAAGAGCAT 1743436 Query 2523 CTTCTTTTGTAAGAGAGCAATTTGGATAAGTGAGGAAATAATTTTTGGAATTAAT 2577 | |||||||| || || || |||| |||||||||||| ||||||| ||| || Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Score = 113 bits (124), Expect = 8e-22 Identities = 237/345 (69%), Gaps = 9/345 (3%) Strand=Plus/Plus Query 2237 GATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCGATGTAG 2296 ||||||||||| || ||||| || |||| || | | |||||| ||||| || ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2297 TCCTTGAC--ATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACC 2354 || || ||| || |||||||||| |||| || |||||||| || | | Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2355 TGGTTGGGGATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACT 2414 | || ||| | | |||||| || | ||||| ||| | | |||||| ||||| Sbjct 1749086 TA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT 1749144 Query 2415 GGATGAGCACGTGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATCTTGATGA 2474 || || || || | ||| ||||||| | | || || |||||||| | || |||| Sbjct 1749145 AGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACACTTTTATGA 1749202 Query 2475 ATTTTTTATTTGTAGGAGT--TTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGT 2532 |||| ||||||||| || ||| ||||||| || || ||| | || |||||||| Sbjct 1749203 ATTTAAGATTTGTAGG-GTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTTGT 1749260 Query 2533 AAGAGAGCAATTTGGATAAGTGAGGAAATAATTTTTGGAATTAAT 2577 || | || |||| ||||||| |||||||||||| ||| || Sbjct 1749261 GAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTAT 1749305 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 2371 GTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACTGGATGAGCACGTGAAT 2430 |||||| || | ||||| ||| | | | |||||| |||||||| || ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2431 ATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGG 2490 ||| |||||||| | || || |||||||| | | |||||||| ||||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2491 AGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGTAAGAGAGCAATTTGGATA 2550 | | ||||||| || || ||| | || ||||||| ||||| || |||| | Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2551 AGTGAGGAAATAATTTTTGGAATTAATAAGAAAACGTTTCGGATGCATGTTGACCAAAT 2609 |||||||||||| |||| | ||| || ||| | |||||| ||| || ||||| Sbjct 588069 AGTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTTCGGAGCCATTTTTTTCAAAT 588011 Score = 80.6 bits (88), Expect = 5e-12 Identities = 225/339 (66%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 2231 CTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCG 2290 || || |||||||||||||| ||||| || ||||| || | |||||| ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2291 ATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2350 ||||| || |||| ||| |||||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2351 GACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCG 2410 | ||| | ||| | | |||||| || || |||| || | | || ||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2411 AACTGGATGAGCACGTGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGA-TCTT 2469 || | || || ||||| | ||| |||||||| || | | |||| ||| | |||| Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2470 GATGAATTTTTTATTTGTA--GGAGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCT 2527 |||||||| |||| || | |||| | ||||||| || ||| | || ||| Sbjct 599018 -ATGAATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAA-ATGATGAAGAACATCATCT 598961 Query 2528 TTTGTAAGAGAGCAATTTGGATAAGTGAGGAAATAATTT 2566 ||| |||||||| |||| ||||| ||||||| ||| Sbjct 598960 TTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTT 598922 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 235/352 (67%), Gaps = 14/352 (4%) Strand=Plus/Minus Query 2231 CTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCG 2290 || || |||||| ||| || | ||| || || || || | ||||| ||||| || Sbjct 695250 CTAGCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCTTTTCA 695191 Query 2291 ATGTAGTCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2350 ||||| || ||||| ||| | ||||||| |||| || | |||||| | Sbjct 695190 ATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATTAGATA 695131 Query 2351 GACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTT-TGGCACTTGTACTTCCCTTC 2409 | || | ||| | | |||||| || || ||||| ||| || | | |||| | Sbjct 695130 GTTTTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGGAACA-GAATTTCCTTGT 695072 Query 2410 GAACTGGATGAGCACGTG--AATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATC 2467 |||||||| || | ||| |||||| ||||||| || || || | ||| || | Sbjct 695071 GAACTGGAGAAGTATGTGCGAATATG--GTTCCCCGTTGCTGTGTAGTTTTCTACA---C 695017 Query 2468 TTGATGAATTTTTTATTTGTAGGAGT--TTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTT 2525 || ||||||||| |||||||||| || ||| | |||||| | || ||| | || | Sbjct 695016 TT-ATGAATTTTATATTTGTAGG-GTAGTTGAGGATTTTGA-GATGATGAAGACCATCAT 694960 Query 2526 CTTTTGTAAGAGAGCAATTTGGATAAGTGAGGAAATAATTTTTGGAATTAAT 2577 || ||| ||||| || | || ||||||||||||| |||||| ||| || Sbjct 694959 CTATTGAGAGAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTATTTAT 694908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996