Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007638.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq1694 77.0 6e-11 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 258/376 (69%), Gaps = 9/376 (2%) Strand=Plus/Plus Query 2234 CCTCTGGCAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGATGGTGTCGCCGTCCTTG 2293 || || ||||||||||| || || ||||| || | || || | | ||| || ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2294 TCGATGTAGGACTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2353 |||||||| || || |||| ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2354 GCTGACCGGTTTGGG-GAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCC 2412 | | ||| ||| || | | ||| || |||| ||||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2413 CTCGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTCTCGTGGAGTTCTCTGCAGAC 2472 ||| ||||| || || || | ||| |||||||| || ||| |||||| |||| || Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2473 CTTAATGTATTTTTTGTTGGTTGGGGTGTTTAGGTTTTGGATTTGGGAAAGTGTTTCCTC 2532 | ||| ||||| || || ||| ||| ||| ||| || || ||| | || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2533 TTTAGTAAGAGAGCAT-TTGGGATAAGTAAGGAAATAATTTTTGCAATAAATGTTAAAGC 2591 ||| || || || ||| |||||| |||| ||||||| |||||||| || || |||| | Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAAACC 1743499 Query 2592 GTTTAGAGGGAGCCAT 2607 | ||||||||| Sbjct 1743500 TT-----GGGAGCCAT 1743510 Score = 114 bits (126), Expect = 2e-22 Identities = 268/397 (68%), Gaps = 17/397 (4%) Strand=Plus/Plus Query 2241 CAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGATGGTGTCGCCGTCCTTGTCGATGT 2300 |||||||||| || || ||||| || |||| || | ||| || ||||| || |||| Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2301 AGGACTTGAC--ATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2358 | || || || ||| || |||||||||| |||| || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTG-----A 1749078 Query 2359 CCGGTT----TGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCT 2414 |||| | ||| | |||||| || | ||||| ||| | ||||||| Sbjct 1749079 ATGGTTCTATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTG 1749138 Query 2415 CGAACTGGATGAGCACGTGAATATGAGGTTCCCCATTCTCGTGGAGTTCTCTGCAGACCT 2474 ||||| || || || || | ||| ||||||| | || ||| ||||||||||| || | Sbjct 1749139 TGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTT 1749196 Query 2475 TAATGTATTTTTTGTTGGTTGGGGTGTTTAGGTTTTGGATTTGGGAAAGTGTTTCCTCTT 2534 | ||| |||| || || ||| ||| ||||||| || || ||| || |||| Sbjct 1749197 TTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTT 1749256 Query 2535 TAGTAAGAGAGCAT-TTGGGATAAGTAAGGAAATAATTTTTGCAATAAATGTTAAAGCGT 2593 | || || | ||| |||||| |||| || ||||||||||||| || || |||| Sbjct 1749257 TTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATG 1749315 Query 2594 TTAGAGGGAGCCATAATGGTCAATGATCACCGATTGA 2630 ||| ||||||||| | |||| | ||||||||| Sbjct 1749316 TTATTGGGAGCCAT--TTTTCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 141/204 (69%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 2377 GTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGAAT 2436 |||||| || ||||| ||| | | ||||||| |||||||| || ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2437 ATGAGGTTCCCCATTCTCGTGGAGTTCTCTGCAGACCTTAATGTATTTTTTGTTGGTTGG 2496 ||| |||||||| | ||| ||||||||||| || | ||| |||| || || | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2497 GGTGTTTAGGTTTTGGATTTGGGAAAGTGTTTCCTCTTTAGTAAGAGAGCAT-TTGGGAT 2555 ||| ||||||| || || ||| || ||||| | ||||| ||| |||||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA- 588071 Query 2556 AAGTAAGGAAATAATTTTTGCAAT 2579 |||| |||||||| |||| || || Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTAT 588047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713283554724