Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007723.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3069 80.6 5e-12 seq1694 80.6 5e-12 seq519 78.8 2e-11 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1298 CAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGA-CTGTGATGATGTCGTGGT--T 1354 ||| |||||||| |||||| ||||| |||| |||| || | ||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT-ATGATGTCGTGGTCGT 3754459 Query 1355 CATTAGGAATGGCCGGTGGTGGTGCTCGGTTATCTTGAAATAGAGGGGATTTGTTATCTC 1414 ||| ||||| | ||||| |||| ||||||||| |||||||||| || || Sbjct 3754460 TGTTA--AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTC 3754517 Query 1415 CCAGATAAACACGCCATTCTCGGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATC 1474 || ||| | ||| |||| | | || ||| | ||||| || ||| ||||| ||| Sbjct 3754518 TCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1475 CATAGT 1480 ||| || Sbjct 3754578 CATTGT 3754583 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 124/172 (72%), Gaps = 10/172 (6%) Strand=Plus/Minus Query 1314 TTGTGATTGAACTGTACTTGGA-CTGTGATGATGTCGTGGTTCATTAGGAATGG---CCG 1369 |||| |||||||||| ||||| || | || ||||||||||| | |||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCT-ATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1370 GTGGTGGTGCTCG-GTTATCTTGAAATAGAGGGGATTTGTTATCTCCCAGATAAACACGC 1428 | ||| ||| ||||||||||||||||| |||||| || ||||| | | |||| Sbjct 596582 CTAGTG----TCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGC 596527 Query 1429 CATTCTCGGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGT 1480 |||| | | | |||| |||||| ||||||| |||| ||||||| || Sbjct 596526 CATTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGT 596475 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 129/180 (72%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 1304 TTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTGATGATGTCGTGGTTCATTAGGAA 1363 |||||| || |||| ||||| |||| |||| | |||||||||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1364 TGGCCGGTGGTGGTGCTCG-GTTATCTTGAAATAGAGGGGATTTGTTATCTCCCA--GAT 1420 | | | |||| ||| ||||||||||||||||||| ||||| || ||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTT-TCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1421 AAACACGCCATTCTCGGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGT 1480 | ||| ||||| | | |||||| ||||| ||||||| ||| | ||||||| || Sbjct 1741995 ATACA--CCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726083089876