Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007724.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq519 131 3e-27 seq3069 96.9 6e-17 >seq519 Length=3254320 Score = 131 bits (144), Expect = 3e-27 Identities = 236/344 (69%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 2227 CCCCTCGAGCAGATCGGCCGTCGACCTGGAATTGACCCCATTCAATGGTGTCTCCATCCT 2286 ||||| |||||||| || || | || || | | | || || | | |||||| |||| Sbjct 1743142 CCCCT--AGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCT 1743199 Query 2287 TATTGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAAT 2346 | | |||||| || || |||| ||| | ||||||| |||| ||| ||||||| | Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2347 GTGTTGATCGGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTGC 2406 | | | || | | ||| | | ||| || |||| | ||| ||||| | |||| | Sbjct 1743260 GAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2407 CTTCGAATTGCATAAGCACGTGGAGATGAGGGTTCCCATTGTTGTGTAATTCTCTGCAAA 2466 || ||| || ||||| || || | ||| || | ||| ||| |||||| |||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2467 TTTTTATGAATTTTATATTAGTAGGGGTTTGCAGGTTTTGTAATTGGGAAAGTGCTTCCT 2526 | |||||||||||| ||| |||||| | ||| ||| | || ||| || || | Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2527 CTTTGGTGAGAGAGCACTCTGGGTATGTTAAGAAATAATTTTTG 2570 |||| ||||| || || |||| | || | ||||| ||||||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTG 1743483 Score = 98.7 bits (108), Expect = 2e-17 Identities = 203/297 (68%), Gaps = 5/297 (2%) Strand=Plus/Plus Query 2276 GTCTCCATCCTTATTGATGTAGGACTTGAC--ATCGGAGCTGGATTTAGCTCCCTGAATG 2333 |||||| ||||| | ||||| || || || ||| || | |||||||| |||| Sbjct 1749004 GTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACA 1749063 Query 2334 TTTGGATGGAAATGTGTTGATCGGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTG 2393 ||||||||||| || | | || || ||| | |||||| || | | ||| ||| Sbjct 1749064 TTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTG 1749122 Query 2394 CAGTTGTATTTGCCTTCGAATTGCATAAGCACGTGGAGATGAGGGTTCCCATTGTTGTGT 2453 ||| | |||| ||| ||| | | | || || | ||| || ||||| ||| ||||| Sbjct 1749123 CAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCAAATGTGG-TTCCCGTTGCTGTGT 1749180 Query 2454 AATTCTCTGCAAATTTTTATGAATTTTATATTAGTAGGGGTTTGCAGGTTTTGTAATTGG 2513 | ||||||||| | |||||||||||| | ||| |||||| | ||||||| | || Sbjct 1749181 AGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGA 1749240 Query 2514 GAAAGTGCTTCCTCTTTGGTGAGAGAGCACTCTGGGTATGTTAAGAAATAATTTTTG 2570 ||| | || ||||| ||||| | || |||| | || | |||||||||||| Sbjct 1749241 CGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTG 1749297 >seq3069 Length=10854949 Score = 96.9 bits (106), Expect = 6e-17 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 1287 CAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTA-CTGTGATGATGTCGTGGTTCC 1345 ||| |||||||| |||||| |||||||||| | || | || | ||||||||||||| Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT-ATGATGTCGTGGTCGT 3754459 Query 1346 TCAGAAATGGACTCTCGTGGTGTTTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCC 1405 | |||||| ||| |||||| |||| ||||||||||||||||||| || | Sbjct 3754460 TGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTC 3754519 Query 1406 AGATATACACGCCATTCTCTGATTGAGTTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCA 1465 | ||||| ||| |||| | | | || | |||||| || ||| ||||| ||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1466 TGATCAGCGCAATTAATGCTGCTGTAATAAGAACAGCCACATGGGAGATCAACCCTCCTC 1525 | | |||||||||| ||| || | || |||||| | || ||| | | | Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTT 3754639 Query 1526 CTCCTGATTG 1535 ||||| |||| Sbjct 3754640 CTCCTAATTG 3754649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268