Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007726.1 Length=2674 Score E Sequences producing significant alignments: (Bits) Value seq519 125 1e-25 seq1129 118 2e-23 seq1694 113 8e-22 seq3069 82.4 1e-12 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 174/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1540 AATTTAGCATTGTGAAGTGTCCACGATTTTAAAGCTGCATTCTCTTCTTTGTCGAGGAAA 1599 |||| |||||| || || |||| || | |||| |||| || || || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1600 TCTTTATAACTGACTCCCTCACCAGGATTGCAGAGCACGATTGCTGGGATGCCAACTGTA 1659 |||||||| | ||||||| ||| ||| | ||||||| |||||||||| || || Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1660 ATTTGAACTGGCTTTCCG-TATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAA 1718 |||| ||| | |||||| | |||||||| ||||| |||||||| | |||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1719 TTCCTTCCAGTG----CTTTAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTAT 1774 ||| ||||| || || | ||||| || || || || ||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1775 A 1775 | Sbjct 1742491 A 1742491 Score = 86.0 bits (94), Expect = 1e-13 Identities = 194/279 (70%), Gaps = 12/279 (4%) Strand=Plus/Plus Query 1194 ATGTCGTCCAGA-CTTGGAAGTTCAGGAATGCCTGGTGGAGATCCAACGCTCTCCTGAGG 1252 |||||||||||| |||| || | | |||||| || | | | | | ||||||| Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGA 1741885 Query 1253 TTGTGGTTGAACCGTATCTGGATGTGGTACACTT--TGGTCGTTGTGTACATTATTTCTT 1310 |||| |||||| |||||||||| | | | |||| ||||| || ||| | || | Sbjct 1741886 TTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGT-TAAATTGTCTCCT 1741944 Query 1311 CTACTAGGTAG--ATCTTGAAATACAGGGGATTTGATATCTCCCAGATATAAACGCCATT 1368 || | | ||||||||||| |||| ||||| || ||||| ||| || ||||| Sbjct 1741945 CTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATT 1742004 Query 1369 CTCTGC-CTGAGGCACAGTGATGAGTTCCCCGGTGCGTGAATCCATGGTTGCTGCAGCTG 1427 | ||| |||| || ||||| ||||||||||| | ||||||| ||| || ||| | Sbjct 1742005 GT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTA 1742062 Query 1428 ATGTGGACGT-ATATAGTGCATCCACACTCTAGATCTAT 1465 ||||| || ||||| |||| ||||| | || ||| || Sbjct 1742063 ATGTGTTGGTAATATA-TGCAACCACAGTATATATCAAT 1742100 >seq1129 Length=1508174 Score = 118 bits (130), Expect = 2e-23 Identities = 238/349 (68%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 1577 CATTCTCTTCTTTGTCGAGGAAATCTTTATAACTGACTCCCTCACCAGGATTGCAGAGCA 1636 |||| || ||||| || |||||||||||||| | | || ||||| ||||| || | | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1637 CGATTGCTGGGATGCCAACTGTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCC 1696 ||||| ||||| | | || ||||| |||| || || || || |||||||| |||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1697 AGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAACTTTAGATAATGCGGTGCGA 1756 | |||||||| | |||||||| || ||| | ||||| | ||||| ||| || | | Sbjct 679297 AATCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1757 CGTCATCAATGACGTTATACTCCACTTCGTTCGAGAAAACCTTTGAGTTGAAGTCCA--- 1813 | ||||| ||||| ||||| | || || ||| || | |||||| || | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGT 679179 Query 1814 GATGGCCACTCAAGTAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTCCCTGTCC 1873 ||||||| | | ||||||||| || | | || || ||| | | || || ||| | Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT-- 679121 Query 1874 TTGAAT--CACCTTCGACTATCAAACTCTTAGGTCTCAATGGCCGCGCA 1920 | || | ||||| | || | ||| |||||||| ||||| |||| Sbjct 679120 TCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCA 679072 Score = 84.2 bits (92), Expect = 4e-13 Identities = 141/203 (69%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 2316 GTCGAAGAGTCTTTGATTTGTGCAGACGAACTTCCCTTCGAACTGGATAAGCACGTGGAG 2375 |||||| | |||||||| ||||| ||| |||||| |||||||| ||| ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2376 ATGAGGTTCCCCATCT-----TCGTGAAGCTCTCTGCAGATTTTAATGAATTTCTTATTT 2430 ||| |||||||| | | | | || | | |||| ||| | ||||| || |||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2431 GTTGGAGTATTTATGGTTTGTAATTGGGAAAGTGTCTCTTCTTTAGAGAGAGAACAACGA 2490 || || ||| || ||||| | || ||| | || ||||| ||||||||||| | Sbjct 678508 GTAGG-GTAGTTGAGGTTTTGAGATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTT 678450 Query 2491 GGATATGTGAGGAAGTAGTTTTT 2513 | | ||||||| |||||||| Sbjct 678449 GAGAAACTGAGGAAATAGTTTTT 678427 >seq1694 Length=789422 Score = 113 bits (124), Expect = 8e-22 Identities = 212/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 1530 GATGAAGATGAATTTA------GCATTGTGAAGTGTCCACGATTTTAAAGCTGCATTCTC 1583 |||| ||||||||| | ||||| || || ||||| || | || |||| || Sbjct 599888 GATGCAGATGAATTCAAATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTC 599829 Query 1584 TTCTTTGTCGAGGAAATCTTTATAACTGACTCCCTCACCAGGATTGCAGAGCACGATTGC 1643 |||| || ||||||||||||| | || ||||| ||||| || | ||||||| Sbjct 599828 CTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGA 599769 Query 1644 TGGGATGCCAACTGTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTT 1703 || |||| || | |||||||||| | || || || ||||||| ||||| ||||| Sbjct 599768 TGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTT 599709 Query 1704 TTGAGCACCAATCAATTCCTTCCAGTGCTTTAACTTTAGATAATGCGGTGCGACGTCATC 1763 ||| | ||||| ||||| ||| | ||||| | ||||| ||| || || | ||||| Sbjct 599708 TTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATC 599649 Query 1764 AATGACGTTATACTCCACTTCGTTCGAGAAAACCTTTGAGTTGAAGTCCAGATGGCCACT 1823 |||| | |||| | || ||| |||| || | |||||| || || || || Sbjct 599648 AATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCT 599589 Query 1824 CAAGTAATTATG 1835 | ||||||||| Sbjct 599588 TATGTAATTATG 599577 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 2316 GTCGAAGAGTCTTTGATTTGTGCAGACGAACTTCCCTTCGAACTGGATAAGCACGTGGAG 2375 |||||| | ||||||| ||||| ||| |||||| |||||||| ||| ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2376 ATGAGGTTCCCCATCTTCGTGAAGCTCTCTGCAGATTTTAATGAATTTCTTATTTGTTGG 2435 ||| |||||||| ||| || |||||||| | | |||||||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2436 AGTATTTATGGTTTGTAAT-TGGGAAAGTGTCTCTTCTTTAGAGAGAGAACAACGAGGAT 2494 | || || ||||| | | || ||| || ||||| ||||||||||| | || Sbjct 588129 A-TAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA 588071 Query 2495 ATGTGAGGAAGTAGTTTT 2512 | |||||||| ||||||| Sbjct 588070 AAGTGAGGAAATAGTTTT 588053 Score = 77.0 bits (84), Expect = 5e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 1322 ATCTTGAAATACAGGGGATTTGATATCTCCCAGATATAAACGCCATTCTCTGC-CTGAGG 1380 ||||||||||| || |||||| || ||||| ||| |||||||| | ||| | ||| Sbjct 596569 ATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTGT-TGCACCGAGC 596511 Query 1381 CACAGTGATGAGTTCCCCGGTGCGTGAATCCATGGTTGCTGCAGCTGATGTGGACGT-AT 1439 |||||||| ||||||| |||| ||||||| ||| ||||| | || || || || Sbjct 596510 CACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAATATGTTGGTAAT 596451 Query 1440 ATAGTGCATCCACACTCTAGATC 1462 || ||||| ||||| | || ||| Sbjct 596450 AT-GTGCAACCACAATATATATC 596429 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 191/276 (69%), Gaps = 13/276 (5%) Strand=Plus/Plus Query 1194 ATGTCGTCCAGA-CTTGGAAGTTCAGGAATGCCTGGTGGAGATCCAACGCTCTCCTGAGG 1252 |||||||||||| |||| || | | |||||| || | | ||| ||| |||||||| Sbjct 3754358 ATGTCGTCCAGATCTTGAAAAAT-ATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGG 3754416 Query 1253 TTGTGGTTGAACCGTATCTGGATGTGGTACACTT--TGGTCGTTGTGTACATTATTTCTT 1310 ||| |||||| |||||||||| | | | |||||||||| || || | || | Sbjct 3754417 TTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGT-TAAATGGTCTCCT 3754475 Query 1311 CTACT---AGGTAGATCTTGAAATACAGGGGATTTGATATCTCCCAGATATAAACGCCAT 1367 || | | || | ||||||||| |||||||||| || || || ||||| ||| ||| Sbjct 3754476 CTGGTGTCATGT-TAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCAT 3754534 Query 1368 TCTCTGC-CTGAGGCACAGTGATGAGTTCCCCGGTGCGTGAATCCATGGTTGCTGCAGCT 1426 | | ||| || || | ||||| || ||| ||||| ||| ||| ||| |||| | Sbjct 3754535 TGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATT 3754593 Query 1427 GATGTGGACGTA-TATAGTGCATCCACACTCTAGAT 1461 |||| ||| ||| ||||| ||||| | || || Sbjct 3754594 AATGTCTTGGTAGTAT-GTGCAACCACATTATATAT 3754628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8447693200320